Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00116 ATGGAGGTAGTAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCGTCGTTCAGCAAACGCACTGCGAGGATTTTTTCTGTTTCAACGCCAACACCGTCGTCGGAGGCGACGATTTCTTCGTCGACGACCTATTTGACTTCTCAGACGGCTCTCTTCACTACGAACAGCAAGATTGCGTTGAAGAAAAAAAAAGTTTATCGGCTTCCTCGCAGTCAAAGGACCAAGGAGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCTGCCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTCTCACTTTTATACCCGGTTCGTTCGGAGGAAGTGAACCGGCGGGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAATGAAAATAACGACCAAGGCGAGAACTGTACGGAATAGAAAGCCCAACGCCCGCGTGTGGTCGTTGGGCCCGTTGCTCTCGCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCTGTGACGGAGCCACCCGCGAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGCCCGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCGCAGTGGAGGACGGGCCCCCTGGGCGCCAAAACCCTCTGCAACGCCTGCGGGGTTCGCTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCTTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAATAGTCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGAGGTGGCTGGGCCGGACACCGGTTCAGCCCAGGCCCAAATGGTTCCCACCTGCTGA 903 0.5515 MEVVVAKALKPSLRREFVVQQTHCEDFFCFNANTVVGGDDFFVDDLFDFSDGSLHYEQQDCVEEKKSLSASSQSKDQGEDDSNSNSTGVSYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEVNRRVEPEPSAKKTPRFPCEMKITTKARTVRNRKPNARVWSLGPLLSLPSSPSSCSSSVTEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKEVAGPDTGSAQAQMVPTC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00116 300 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Phco7g00116 300 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Phco7g00116 300 PANTHER GATA TRANSCRIPTION FACTOR 31 294 - -
Phco7g00116 300 MobiDBLite consensus disorder prediction 65 88 - -
Phco7g00116 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Phco7g00116 300 MobiDBLite consensus disorder prediction 181 195 - -
Phco7g00116 300 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Phco7g00116 300 PIRSF Txn_fac_GATA_plant 13 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco7g00116 300 MobiDBLite consensus disorder prediction 181 210 - -
Phco7g00116 300 FunFam GATA transcription factor 207 294 - -
Phco7g00116 300 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Phco7g00116 300 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Phco7g00116 300 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00116 Phco-Chr7 766027 767028 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g00116 GATA 9.4e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00116 7 766027 767028 Phco7g00116 7 766027 767028 ECH
Phco7g00116 7 766027 767028 Phco9g00455 9 3260055 3261095 ECH