Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00098 ATGGGCGAGGAGGAACGTGACGAAGGAGGTTCTGTCCCAGGGGTTGTTGCCGCCGACCAAACCCCGCAGCAACTCGTGTCCAGGGCCATAGCCCCCGTCAAGAAGGAATTCCTACGCCCACCTCCAGTTCGGTCTTCCGCTCCAAACGACGACGTTTCCATTCCCAACGAAAACAGGACCTCCGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGTGAACGTCGTGAGGAACAAGAACAAAAGTCAGCAAAAAACATATGTCCCGTAGTTGCGAAGACGGGTGATGTTAGTTCGTGTCGTTATAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGAAGGACAATGCCCGTTCGTTAAATTTGGGGGCTCTTGCCCTTATCGCTTAACGTGTAGATTTTCGAGCACGCATGAAGGTGGTGTGCCTTCTGGCGATCGTAATGGCCTGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATGCTAAACTCAAAAGTCTCGGCCTTCTGGGACCGTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTGTGATCATTCTGTTGACAGTGGCTCTTGTGTTGTTACGTCTGACTCAGGTTCTAAGTTGGAATGCCCTGCTGAAGTTATGAAAGATGATGATAATGGCATAGATGGAAAATGTGAATCTGATGAACTTTGTCTGAAGCGAAGAAAAAATGAAGAAAATTGCGGTTCTAAAGAGGCAGCATATGAAGAGAATTGTGGTCCTATGAAGGCAGAAAACGAAGGTGTTACAGAGAAAATTGTCGAAAGAAGTTGCACAAAATCTGAAGCTGATGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCTGATGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCTGAGGATATAGTCCCAGAAACTGATTTAAGCATAAAATCTGAAGCTGAGGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCCGAGGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCTGAGGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCTGAGGATATAGTCCCAGAAACTGATTTAAGCCTGAAGCTTCACTCACGTGAGAAGAAGCTTATTGATTTTAGGGGGAAGTTGTATCTGGCACCGTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGTGCTGATGTAACTTGTGGCGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGCACAATAGATTTTATTGATATAAATATGGGTTGTCCTATTGACATAGTTGTGAACAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAATGCGGATGAAAAGTATAGTAGAAGTAGCTTCGGGTACAGTGGACAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAACCAGTGCCGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATATCAGTGTGCCAGGAAAGCCCCTACTACGTTGCCAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTGGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGGAATTGGGACATCAGTTCTGGCGAGCGACTAAATATTCTAAAGGATTTTGTGAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACCACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTCAGGTATATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCGGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCTGATGGCTTTACATTTGCACCAAAGCATAAATCAAACGCTTACGATAGAGCTGAAAATGGTTAA 2337 0.4377 MGEEERDEGGSVPGVVAADQTPQQLVSRAIAPVKKEFLRPPPVRSSAPNDDVSIPNENRTSVLAKEKKSKRQLKRERREEQEQKSAKNICPVVAKTGDVSSCRYKDKCRFSHDLEGFKAQKPSDLEGQCPFVKFGGSCPYRLTCRFSSTHEGGVPSGDRNGLKNSSEVNGLSKDVQKLLWKNKMSFSKADAKLKSLGLLGPSKSKRNDLENKEGVDTGSNKCDHSVDSGSCVVTSDSGSKLECPAEVMKDDDNGIDGKCESDELCLKRRKNEENCGSKEAAYEENCGPMKAENEGVTEKIVERSCTKSEADDIVPETDLSTKSEADDIVPETDLSTKSEAEDIVPETDLSIKSEAEDIVPETDLSTKSEAEDIVPETDLSTKSEAEDIVPETDLSTKSEAEDIVPETDLSLKLHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGTSAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALIKPWIFTEIKEQRNWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00098 778 ProSiteProfiles Zinc finger C3H1-type profile. 84 115 IPR000571 GO:0046872
Phco7g00098 778 Coils Coil 63 84 - -
Phco7g00098 778 MobiDBLite consensus disorder prediction 199 223 - -
Phco7g00098 778 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 772 - -
Phco7g00098 778 SUPERFAMILY FMN-linked oxidoreductases 426 739 - -
Phco7g00098 778 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 80 158 - -
Phco7g00098 778 Gene3D - 79 154 - -
Phco7g00098 778 MobiDBLite consensus disorder prediction 302 341 - -
Phco7g00098 778 CDD DUS_like_FMN 426 660 IPR035587 -
Phco7g00098 778 Pfam Dihydrouridine synthase (Dus) 429 664 IPR035587 -
Phco7g00098 778 ProSitePatterns Uncharacterized protein family UPF0034 signature. 510 528 IPR018517 GO:0008033|GO:0017150|GO:0050660
Phco7g00098 778 MobiDBLite consensus disorder prediction 205 220 - -
Phco7g00098 778 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 422 664 - -
Phco7g00098 778 MobiDBLite consensus disorder prediction 61 85 - -
Phco7g00098 778 Gene3D Aldolase class I 422 664 IPR013785 -
Phco7g00098 778 MobiDBLite consensus disorder prediction 1 89 - -
Phco7g00098 778 MobiDBLite consensus disorder prediction 359 398 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco7g00098 Dus 8.9e-49 CL0036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00098 7 617579 622714 Phco7g00098 7 617579 622714 ECH