Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00076 ATGAGCGAGAGTGAGAAGCAGAGGATAACCGGAAAGGTGAAGTGGTTCAATGACCAGAAGGGATTTGGCTTTATAACCCCCGACGACGGCGGCGAAGATCTCTTTGTCCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTCGGAGAGTCCGTCGAGTTCTTCATTGACTCCGACCCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCACCCGTGCAGGGCACCCGCGGTGGCGGAGGAGGAGGAAGAGGTGGATACGGTGGCGGCGGTGGGAGAGGCGGCTATGGCGGTGGAGGGCGCGGAGGGCGAGGTGGATATGGAGGCGGTGGCGGATATGGTGGAGGTGGCTACGGCGGAGGTGGTGGATATGGTGGAGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGCGAGACGGGCCACATAGCGAGGGACTGCAGTCAAGGTGGTGGTGGAGGTGGTGGAGGAAGGTACGGCGGAGGTGGCGGCGGTGGCGGCGGCGGTAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCAAGGGACTGCCCTTCGAATGGGCGTTGA 588 0.6293 MSESEKQRITGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSDGFRSLALGESVEFFIDSDPEGRTKAVDVTGPDESPVQGTRGGGGGGRGGYGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGCYKCGETGHIARDCSQGGGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPSNGR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00076 195 MobiDBLite consensus disorder prediction 66 100 - -
Phco7g00076 195 Gene3D - 136 162 - -
Phco7g00076 195 Gene3D - 172 195 - -
Phco7g00076 195 FunFam Cold shock protein 1 2 73 - -
Phco7g00076 195 ProSiteProfiles Zinc finger CCHC-type profile. 140 155 IPR001878 GO:0003676|GO:0008270
Phco7g00076 195 SUPERFAMILY Retrovirus zinc finger-like domains 130 193 IPR036875 GO:0003676|GO:0008270
Phco7g00076 195 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Phco7g00076 195 ProSiteProfiles Zinc finger CCHC-type profile. 177 192 IPR001878 GO:0003676|GO:0008270
Phco7g00076 195 SMART csp_8 10 75 IPR011129 GO:0003676
Phco7g00076 195 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Phco7g00076 195 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Phco7g00076 195 Gene3D - 1 85 IPR012340 -
Phco7g00076 195 Pfam Zinc knuckle 176 192 IPR001878 GO:0003676|GO:0008270
Phco7g00076 195 Pfam Zinc knuckle 139 155 IPR001878 GO:0003676|GO:0008270
Phco7g00076 195 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Phco7g00076 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 106 192 - -
Phco7g00076 195 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Phco7g00076 195 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Phco7g00076 195 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Phco7g00076 195 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Phco7g00076 195 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Phco7g00076 195 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00076 Phco-Chr7 504067 504654 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Phco7g00076 CSD 3.4e-25 CL0021