Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00046 ATGGAGATGGGTGATGGAACAGAGGCCGTGGAGGACGACACTGCTACTGCTTTAACCTCTGAAGAGGACCATCATCTGTGGTTCACTTTCCTTCAACTAGAACACGCTCATACTAACACTAATACTGTTCTGGAGGATCCTTCTGTCGCAATACAAATGGAATGCGAATGTGAATACGGTGGTGAATCACACCGAGCAGCCTCGTTAAGTAGGTTCCGCCAGAAGAGGAAACGAAGATGCTTTGCTAATAAAATTAGATACAGGACACGTCAAGAAGCTACTCTCAGGGTACATCGTAGTAAGAGCCAGTTTATTTTGTCCAAAATCCAGGAGTCAGGCCAAGATCTCATTCACTCAGAAATGTTATGCAGGAATTGTGGCATCAGCTCAAAATGCACCCCTATGATGCGGCGTGGGCCATCTGGACCAGGAACACTTTGCAACGCGTGTGGGCTTTCTTGGGCAAACAGGAGGGGGGAATGTGGTATCTTGTGGCGAGAGGGTAAGGTTTTGGTGTTAATTTGA 525 0.4705 MEMGDGTEAVEDDTATALTSEEDHHLWFTFLQLEHAHTNTNTVLEDPSVAIQMECECEYGGESHRAASLSRFRQKRKRRCFANKIRYRTRQEATLRVHRSKSQFILSKIQESGQDLIHSEMLCRNCGISSKCTPMMRRGPSGPGTLCNACGLSWANRRGECGILWREGKVLVLI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00046 174 SMART GATA_3 117 171 IPR000679 GO:0006355|GO:0043565
Phco7g00046 174 PANTHER GATA TRANSCRIPTION FACTOR 28 62 157 IPR045280 GO:0006355
Phco7g00046 174 ProSiteProfiles CCT domain profile. 65 107 IPR010402 GO:0005515
Phco7g00046 174 CDD ZnF_GATA 123 158 IPR000679 GO:0006355|GO:0043565
Phco7g00046 174 ProSitePatterns GATA-type zinc finger domain. 123 150 IPR000679 GO:0006355|GO:0043565
Phco7g00046 174 Pfam GATA zinc finger 123 158 IPR000679 GO:0006355|GO:0043565
Phco7g00046 174 Gene3D - 121 160 IPR013088 GO:0006355|GO:0008270
Phco7g00046 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 158 - -
Phco7g00046 174 Pfam CCT motif 65 105 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00046 Phco-Chr7 282618 284408 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g00046 CCT 7.7e-09 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00046 7 282618 284408 Phco7g00046 7 282618 284408 ECH