Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00030 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTCAAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGGAAGATAGAAGTCATGCTGATGATCCTTACTGCTCAAGCTTTGGTCAGACATCAACTGCTAGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAAGGAGTCAAATTTCAAGCTAGAGCCAACTAATATGCAGGCAAGTGCAAACTACCCTTCAGCCATAAGCTCTGCTGCACATTTATCATCAGCTGAGGAACAGCCAGCTGGTTTTCGGGTAAATCATGAAATTGAAGTGGTTAAAAATCCTACTACACCTTCAGTCTTGTTTGATGGAGTAGCCAAAGATATCACCCATAAAAACTTAGGTATTAGCAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAGATATGGAAACTGAAATGGATGGAAATGGTGAATGTTCCTCCTCCAGTGTAATAGTCATGGATTCCACTAGGGAAGAAGTGACGGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAATATTCTCCTGAACATAATGTGGCTTCTGGGGAAGATGCTGCCATCACTGGTAATAGCTGCTGTTCCAGGTCGTGCAAAATATGTGATCGTATAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCGTCTTGTTACAATCCACGTTTGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTGAAGAAAAGGCAGAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTTAAGGGTGAAGCAAATCCCATACTTTCGATGTTGAGAGACACTGCGCCACATACAACTGCTGTGCGGGTTGGTAAAGGATTTCAAGCAGAAGTTCTTGACTGGTCTGGTCCGATAAAAAGTGAGGAAGATGCCCTTCCTGAACCATTCGAAATTAATCCTTTGGACTTCAATAGGCTACTGGAAGAGAACACACAAAGTCCTACTAAACTTAGTGCCATTGGTAATTGGATTCAATGTCAGGCAGTTATAGACAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTGATGTCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAATATGTGGAAGTGCTACGGCCACGAGTTGCTGCTAAACGGAAAAAATCAGATTGCACACAAAATAAGGATTGA 1446 0.4129 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNRYPLDWCRKAEPVEEDRSHADDPYCSSFGQTSTASIMTENTTPKPKMVYRRKKLRKESNFKLEPTNMQASANYPSAISSAAHLSSAEEQPAGFRVNHEIEVVKNPTTPSVLFDGVAKDITHKNLGISSVNDSCSSSKPDMETEMDGNGECSSSSVIVMDSTREEVTEKDFCINTLRTHGLLREYSPEHNVASGEDAAITGNSCCSRSCKICDRIDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGEANPILSMLRDTAPHTTAVRVGKGFQAEVLDWSGPIKSEEDALPEPFEINPLDFNRLLEENTQSPTKLSAIGNWIQCQAVIDRANGTICGKWRRAPFFEVQTDVWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRVAAKRKKSDCTQNKD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00030 481 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 244 307 IPR047171 GO:0006338
Phco7g00030 481 Gene3D - 394 459 - -
Phco7g00030 481 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Phco7g00030 481 SMART PHD_3 250 296 IPR001965 -
Phco7g00030 481 MobiDBLite consensus disorder prediction 173 195 - -
Phco7g00030 481 SUPERFAMILY FYVE/PHD zinc finger 242 300 IPR011011 -
Phco7g00030 481 ProSiteProfiles Zinc finger CW-type profile. 390 450 IPR011124 GO:0008270
Phco7g00030 481 Pfam PHD-finger 251 297 IPR019787 -
Phco7g00030 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 309 IPR013083 -
Phco7g00030 481 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Phco7g00030 481 FunFam uncharacterized protein LOC106759733 isoform X4 394 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00030 Phco-Chr7 194060 200193 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g00030 PHD 1.1e-10 CL0390