Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g00027 | ATGACTCATTATACGTGGCCCGCGGAGCCTGCGCAACAGCAATCAAAGCTGCTTGATCTACTTGATCAGCTTGGTTGTGCTATTCTGGCTTTAGTTGGCGTTGGTGGCATTGGCATCGGCATTCCCATGGAAGGCTTGGCGCTTCTTCCATTTCCAAAGCTTCCAAAGCTTTCAAAGCTTGCCGCCATTTCCACTCCTAACAATAATAATGTTAATAATACCAATGGATTTCTGTCTCTCAGACCGCACCGTCCACGCTGCTTTCGTTTTCGCACTTCATTGTTTTCCAAGGCACAGGACCTTCCTCTTCCCCAACACCAACAGCAGCAGCAACAACAACAACAACAGCAACAAGTCACAGTGAATCCCAATTGTGTGAGTGGGGATTCCATACGTCAGAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAACCTCCTTCCCAGCGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAGAGATGCATCCGTACTAACGATATCGACAATGTTGGCCTAACTTCCAGACATCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCACCGGACCGATTGTGGATCAGTGTTTATGAAGATGATGACGAAGCTTTTCAGCTATGGTCTGATGAGATTGGTGTCCCAGTTGAACGTATAAAAAGGTTGGGAGAAGAAGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGCAGATGCTGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAGGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTACAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGGAGGCCTCTAAGTTAGCAAATGTTTCTTATAGTATTGCTGATGATCAGACAAAGAGGAATCTTAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTGGTTCGACGGCTTATTAGAAGGGTTGCTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGAGACCTTGAAGGAGCGTTTTTACCAATTATTGCTGAGAAGGTTGTGGAGTTAAGTACACACATTGAGGCTGATGTGAAGAACAAAGCACCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTGCTGATGCCTTATCAAGTGCAGAAAGAAATGGAACTGTTCCTTGCCTAGCTGGCGAAGATGTGTTTCTGTTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGTATAGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACATAATACTGTCAAACTTGCCATTGAAAATGGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCCTCATGGTGAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAATAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATGATCAACCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAATCATTAGGCAACATATTTGTGCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATATGAAGCTGAGGCAGCGAGCTAAGGTCCATCATACTGCTACTCATTTACTACAAACTGCCCTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCATGATACTGAGCTTGCTGAAATTGAAGTGCTAATCAATGGATGGGTTGAGGATGCAACACTACTTCAAACCAAAGTGATGCCTCTCGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTCGTAGAGATTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCACGTCAATAATACTTCTGAAATTCGCGGTTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGTGAAGCCTTCATTGAATATATCAATGCCCGAGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGCTAAGCCAGAAGAAGTGACAACAAGGGTAGAAAACCTTTTAGAGGAGTTACGGGCAGTGAGAAATGAAAATTCTGCAGTACGTGCAAAAGCAGCGGTCTACAAAGCTTCCGGTATTGCGAGCAAAGCATTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTAGTTGAGTGCTTCGATGATGTTGATGCTGATTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCCGTGGTACTGGGCTCATGTCCTGGTGAAGGGAAGGTTAGCCTAGTTGCTGCTTTTTCTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATAGCAAAATTATGTGGTGGTGGTGGAGGTGGAAGGCCCAATTTTGCTCAGGCAGGTGGGAGAAAGCCTGAAAATTTGTCAAGTGCCCTCGACAAGGCTCGGTCAGAACTCATGGCTACTCTATGTGAAAAAGGGAATTGA | 3078 | 0.437 | MTHYTWPAEPAQQQSKLLDLLDQLGCAILALVGVGGIGIGIPMEGLALLPFPKLPKLSKLAAISTPNNNNVNNTNGFLSLRPHRPRCFRFRTSLFSKAQDLPLPQHQQQQQQQQQQQQVTVNPNCVSGDSIRQRFLHFYASRGHNLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIDNVGLTSRHHTFFEMLGNFSFGDYFKKQAILWAWELSTSEFGLPPDRLWISVYEDDDEAFQLWSDEIGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYADADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQQVPNNYETDLIFPIIEEASKLANVSYSIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVARTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIEADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLADALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMYSFDIEMEKQRRQSQAAHNTVKLAIENGENIAENVPDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDDQPKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDMKLRQRAKVHHTATHLLQTALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDTELAEIEVLINGWVEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEIPGVSMELCGGTHVNNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKAKPEEVTTRVENLLEELRAVRNENSAVRAKAAVYKASGIASKALLVGNSKQYRVLVECFDDVDADSLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFSPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLSSALDKARSELMATLCEKGN | 1025 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g00027 | 1025 | Hamap | Probable alanine--tRNA ligase, chloroplastic. | 115 | 1022 | IPR027522 | GO:0009507 | |
| Phco7g00027 | 1025 | Pfam | DHHA1 domain | 871 | 1014 | IPR003156 | GO:0003676 | |
| Phco7g00027 | 1025 | FunFam | Alanine--tRNA ligase | 125 | 359 | - | - | |
| Phco7g00027 | 1025 | SUPERFAMILY | ThrRS/AlaRS common domain | 691 | 850 | IPR018163 | GO:0000166 | |
| Phco7g00027 | 1025 | NCBIfam | alanine--tRNA ligase | 131 | 999 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | CDD | AlaRS_core | 129 | 358 | - | - | |
| Phco7g00027 | 1025 | PANTHER | ALANYL-TRNA SYNTHETASE | 113 | 1015 | - | - | |
| Phco7g00027 | 1025 | Gene3D | Bira Bifunctional Protein; Domain 2 | 126 | 359 | IPR045864 | - | |
| Phco7g00027 | 1025 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 126 | 848 | IPR018165 | GO:0003676|GO:0004813|GO:0005524|GO:0006419 | |
| Phco7g00027 | 1025 | MobiDBLite | consensus disorder prediction | 101 | 121 | - | - | |
| Phco7g00027 | 1025 | SUPERFAMILY | Translation proteins | 586 | 691 | IPR009000 | - | |
| Phco7g00027 | 1025 | PRINTS | Alanyl-tRNA synthetase signature | 194 | 205 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | PRINTS | Alanyl-tRNA synthetase signature | 394 | 410 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | PRINTS | Alanyl-tRNA synthetase signature | 343 | 356 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | PRINTS | Alanyl-tRNA synthetase signature | 316 | 327 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | PRINTS | Alanyl-tRNA synthetase signature | 418 | 431 | IPR002318 | GO:0000166|GO:0005737 | |
| Phco7g00027 | 1025 | Pfam | tRNA synthetases class II (A) | 131 | 694 | IPR018164 | GO:0000166|GO:0004813|GO:0005524|GO:0006419 | |
| Phco7g00027 | 1025 | Gene3D | - | 908 | 1016 | - | - | |
| Phco7g00027 | 1025 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 363 | 572 | IPR018162 | GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 | |
| Phco7g00027 | 1025 | FunFam | Probable alanine--tRNA ligase, chloroplastic | 577 | 691 | - | - | |
| Phco7g00027 | 1025 | Gene3D | - | 612 | 691 | - | - | |
| Phco7g00027 | 1025 | SUPERFAMILY | Class II aaRS and biotin synthetases | 128 | 362 | IPR045864 | - | |
| Phco7g00027 | 1025 | SMART | tRNA_SAD_4 | 792 | 835 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Phco7g00027 | 1025 | Gene3D | - | 839 | 900 | - | - | |
| Phco7g00027 | 1025 | Gene3D | - | 702 | 837 | - | - | |
| Phco7g00027 | 1025 | Gene3D | - | 763 | 816 | - | - | |
| Phco7g00027 | 1025 | Coils | Coil | 871 | 891 | - | - | |
| Phco7g00027 | 1025 | FunFam | Alanine--tRNA ligase, cytoplasmic | 692 | 849 | - | - | |
| Phco7g00027 | 1025 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 792 | 835 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Phco7g00027 | 1025 | Hamap | Alanine--tRNA ligase [alaS]. | 127 | 1020 | IPR023033 | GO:0004813 | |
| Phco7g00027 | 1025 | FunFam | Alanine--tRNA ligase | 907 | 1016 | - | - | |
| Phco7g00027 | 1025 | FunFam | Alanine--tRNA ligase | 763 | 816 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g00027 | Phco-Chr7 | 182006 | 190005 | Dispersed |