Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00020 ATGGAATATGGAGCCTTGGTGCACAATGGTACGTGTGGGAGCTTCTCAGATATTTTTGCCCCAGAAACGGACTTTGTGGATGAGCTATTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTGGATGTGGAGGATCGTACCTTAATTGTGGCACGGAGCCTTCCAAGTCAACCAGCAGCATGGAAATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCTAGGGCGAATAATCCAGGGCCATCTTCCTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATCCAGGTATGGGTGCCCGCACGGAGAGGATGTGCAGTAGGGATTCATCAGGACTACCCATACACCCTTGACTATACCACTAATATTACTAATAATAACAATGGGGATGCAACAAGAGTCTTTCAGTTTCAGGAGGAGTGGCTTTCTGATCACTGGACTCCTAACATTCGTTTCCTCAGAACTCACGACTACCCTCGCCTTCAGCAGTACGATCTAAGTGCTGGATCTCTGTCCCTTCCCGTCTTTCAGAGAGGCAGTGGAATTTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACGTCCACCCGGACCTTCAAAGCCTTCAGGGTGTTGATTTTAGGAGCTCTTCTCTTCAGAACTTCATTCCACCAGCCATGACCGTGAAGGGTTTTGACGAGTTATACCAAGGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTGTGCAAGGCGCATGAGTTGCCTTTAGCTTTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCAAACGAAGAGAATTACGTGTCAACTGTGGATCCAGCAAGCTTTGTGGCAGATGTAGATGTATTGGGATTCCTGGAAGCGTGCTCTGAGTACCACCTTTTGGGGGGACAAGGAGTGGTTGGAACAGCTTTCACAACCGCCAAGCCTTGCTTTGCAAATGACATAACTGCCTTCACCAAGGCTGAATATCCTCTCGCACATCATGCAAACATGTTCGGCTTGCATGCTGCTGTGGCCATTCCTCTCCGGAGTGTCTCCGCTGATTTTGTCTTGGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTAATGGATAAGGAGGAGGAGGAGGAATTGGTGGTACACCATCATCATCATCATCATCCTCATGATAGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTTTCGGTGTCTCTGGAATATCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAATGAACAGGTATTCTCGGAATTGGAGGGAACAGGCAGTGTTGGTGTTGGTGGGCGCAGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAAAAGACTATAAGCTTGCCGGTTCTTAGACAATACTTTGCAGGAAGCCTAAAAGACGCAGCCAAGAGCATTGGGGTATGTCCTACCACTCTAAAAAGAATATGCAGACAACATGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGGCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTTCCAATGGTGTTTCAGAATCATCCAAGATCAACAACGATAATTCTAAGTTTTATTCTGAAAATGGGTTGTTTAGTAACCAAGGAGCTACCACCACTACTTCCACTTCTCCTTTCAAATCCCCAACTTCGTCTTGCAGTCAGACTTGTAACCCCACTTCAAACCAATCAACCACTATCATCAACAACAACAATAATAACAACGATGACATTATTCTGATGTCAGAGAACCAAACACTAATCGGCGCATCAATCCAAGTCCAAGGGGAAACAAGGCATTTCACCCACCATCCTCCCATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACTAGCAGTGTCTGGAACACGGGCAGTGGTAGTTTTAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGGGGATTCAGAGATCTGCAGATGGAGATTGCAAGACGTTTCAATCTGAACGAGATTAGCAACATTCAGCTAAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTAACGTGCGATGCAGATCTTGAGGAGTGTAAAGACATTAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTTAATCATTCAACAAATGCATTTGGCGGCACCAGCCCCACTTAA 2469 0.4654 MEYGALVHNGTCGSFSDIFAPETDFVDELFVEGCWVETRVGCGGSYLNCGTEPSKSTSSMEIIFEEESEAESLMVGKRWWIGPRANNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCAVGIHQDYPYTLDYTTNITNNNNGDATRVFQFQEEWLSDHWTPNIRFLRTHDYPRLQQYDLSAGSLSLPVFQRGSGICLGVVEILMPNNVHPDLQSLQGVDFRSSSLQNFIPPAMTVKGFDELYQGALNEIVEVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNEENYVSTVDPASFVADVDVLGFLEACSEYHLLGGQGVVGTAFTTAKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDTQEQKQMLNSLSMLVQQACRSLHVVMDKEEEEELVVHHHHHHHPHDSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSELEGTGSVGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSSNGVSESSKINNDNSKFYSENGLFSNQGATTTTSTSPFKSPTSSCSQTCNPTSNQSTTIINNNNNNNDDIILMSENQTLIGASIQVQGETRHFTHHPPIPIPIQSLDALPPLPQTSSVWNTGSGSFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGGTSPT 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00020 822 Pfam RWP-RK domain 516 563 IPR003035 -
Phco7g00020 822 Pfam PB1 domain 724 805 IPR000270 GO:0005515
Phco7g00020 822 ProSiteProfiles RWP-RK domain profile. 502 583 IPR003035 -
Phco7g00020 822 PANTHER PROTEIN NLP8 73 807 IPR045012 GO:0003700
Phco7g00020 822 SUPERFAMILY CAD & PB1 domains 713 808 - -
Phco7g00020 822 CDD PB1_NLP 724 805 IPR034891 -
Phco7g00020 822 Gene3D - 724 806 - -
Phco7g00020 822 MobiDBLite consensus disorder prediction 490 512 - -
Phco7g00020 822 SMART PB1_new 723 806 IPR000270 GO:0005515
Phco7g00020 822 MobiDBLite consensus disorder prediction 624 652 - -
Phco7g00020 822 ProSiteProfiles PB1 domain profile. 723 806 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00020 Phco-Chr7 132803 135570 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phco7g00020 PB1 1.2e-16 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00020 7 132803 135570 Phco7g00020 7 132803 135570 ECH