Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03234 ATGGGTTGCTTTTCTTGTTTCGATTCCAGGGAAGACGAGAAGCTGAATCCCAATCCTCACCAGGAAAACCATCAGCATCATCTTCATCATCATCACCATCATGATCTTAATCCCCCTATCCCCTCTCGTATTTCCAGACTGCCCTCTGCCGCTGCAGGAGCAGACAAGCTACTCTCGTCAACTAATGGCAATGGTAATACCGGTGACTCCAAAAGGGAATTGGCTGCTCTCAAGGACGGACACATTGCCGCTCAAACTTTCACATTCCGTGAGCTAGCAGCCGCAACCAAAAATTTCAGGCCCCAATCCTTTTTGGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGCCGCCTTGAAACCACTGGTCAGGCTGTGGCTGTTAAACAGTTAGATAGAAACGGTCTTCAGGGTAACCGGGAATTCCTCGTCGAGGTTCTCATGCTCAGCCTTCTACACCACCCTAATCTAGTCAGTCTCATTGGATACTGTGCGGATGGGGACCAACGCCTCTTAGTTTATGAGTTTATGCCATTGGGATCATTGGAAGACCACCTTCATGATCTTCCCCCGGATAAGGAACCGTTGGATTGGAACACCAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATACCTACACGACAAAGCAAATCCTCCAGTCATTTATAGAGATTTCAAATCGTCTAATATATTACTTGACGAAGGTTATCATCCAAAGCTTTCGGACTTTGGTCTTGCAAAGCTGGGTCCAGTTGGTGACAAATCACACGTTTCCACCCGTGTCATGGGAACTTATGGTTACTGTGCCCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGGCGTAAAGCCATTGACAGCACCCGACCCCATGGAGAACAAAACCTTGTGACATGGGCACGCCCACTGTTCAATGACCGGAGGAAGTTTCCAAAGTTAGCCGATCCAGAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCCGCAGCGCGTCCTCTGATTGGGGATGTGGTGACAGCCCTTTCTTTTCTAGCGAACCAGGCTTATGAGCATAAGGGAGGTGGTGATGATAAAAGGAACAGAGATGATCAAGGTGGAAGAATATTGAAAAATGAGCAAGGTGGAGGATCTGGAAGGAGATGGGATTTGGAAGGGTGTGAGAAAGATGAGTCCCCACGTGAAACTGCAAGGATGTTAAACAACAGGGATCTTGATAGAGAACGTGCGGTGGCTGAAGCCAAGATGTGGGGAGAGAATTGGAGGGAGAAAAGACGACAAAGTGCCCAGGGCAGTTTTGATGGTTCTAACGCCTAG 1410 0.4851 MGCFSCFDSREDEKLNPNPHQENHQHHLHHHHHHDLNPPIPSRISRLPSAAAGADKLLSSTNGNGNTGDSKRELAALKDGHIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPELQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYEHKGGGDDKRNRDDQGGRILKNEQGGGSGRRWDLEGCEKDESPRETARMLNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03234 469 Gene3D Transferase(Phosphotransferase) domain 1 176 396 - -
Phco6g03234 469 PANTHER OS07G0668900 PROTEIN 3 384 - -
Phco6g03234 469 CDD STKc_IRAK 105 373 - -
Phco6g03234 469 SUPERFAMILY Protein kinase-like (PK-like) 82 375 IPR011009 -
Phco6g03234 469 MobiDBLite consensus disorder prediction 383 469 - -
Phco6g03234 469 ProSiteProfiles Protein kinase domain profile. 99 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g03234 469 MobiDBLite consensus disorder prediction 11 46 - -
Phco6g03234 469 FunFam Serine/threonine-protein kinase PBS1 176 391 - -
Phco6g03234 469 Pfam Protein kinase domain 102 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g03234 469 MobiDBLite consensus disorder prediction 383 400 - -
Phco6g03234 469 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Phco6g03234 469 MobiDBLite consensus disorder prediction 413 460 - -
Phco6g03234 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Phco6g03234 469 Gene3D Phosphorylase Kinase; domain 1 83 175 - -
Phco6g03234 469 FunFam Serine/threonine-protein kinase PBS1 72 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03234 Phco-Chr6 52784620 52789347 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco6g03234 Pkinase 6.8e-45 CL0016