Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03221 ATGTATCCCCCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTCACTCCATGACCCACGCCCCAACAGGCCTCACGCGCTACGGCTCCGCTCCTGGCTCTCTCCTCACCACCACCGTCGATGCCCTCATCGGAGGATCACGCCCCAACCCCACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCAAACATCATATCAGAACCACGCCCTCGGATCCGCCTTACTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCATATCGCCGCCTCCGCCGCCACCACCACCAACCATAACCACAACCACACCCTCAATGGAGCGGGGTTCACCATCACGCGGGGTTCTCGATTGAAGTCGCAGTTGAGCTTCACGGGTCACTGCCAAGAATCTCTGTGTGGCGGCGATAACACTAACAATTTGGTGCTTGGCGATCATGCCAGCTTCGGAATGGAGCCCTGGGACAGTTCTCATTCTCATTCTAATTCCATCGCCTTTTCCACTCCCCCACCTAAGCGCTCCAAAAACTCCAACTCTTCCACCGATCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGTCTTCCACAGACCACTCTCGAAATGGCAACGGTTGAGAAGCTCCTGCACATTCCTGAAGATTCCGTCCCTTGCAAAATCCGCGCTAAGCGAGGCTGTGCTACTCATCCCCGCAGCATTGCCGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGATTGTCGACGTTGAAGTGACTCTGTCAAAAGTTGCCTTGAAGAGTCTTCATTTGGGAGTCAAGACCAAAGATAAGGACAAAATTGTGACGGTGGTGATCTTTGCAATGTCAATGAATGTGTATGTCAGGCAGCTGGTTTCATCAAGGATCACCTCGCATAATGATCTTTTTGTTGCATACTGGGTACTAAGCTTCACAAAGAACTTGAGAATTGCAGTTGCGGATGCGCACAAAGCAAATAACTTATTTTGTTTTACAATATTCTATGCAAACGTGCTTAGAAGTCAAGGGCAGAGAGAAAGAAGAGGAGGAGAGAAAAAAGTTGGAATGGCGTCGGAGAAGAGAAAGAGAAAAGCTGAGTGTGATATTGGGAAGAAGAAGAAGAAGAAGAAGAGGAAGGAGGAGGAAGAAGCGGAGGTAGAAGAGAAGTCCGATGAACCTTCGTCGGAGGCTCTGCGTGTCCTTGAGTCGGCGATGGGTCTTCAGCTTTCATCGCTGGAGTTGGAGTCCCTCAGAGAAGAATGCATTCTGGAGGTACCAAATCACTCTGATGTCCAAACATTGGGGAAAACTGTTAAGGCGGCGTTTGGCGGCGCATGGAGGGAGCATCTCTGCGAAGGGAGTGTGGTTGAGGGAAAAGTTAATGCCGGAAGCCCCGCGGTTCTGATCATAACTTCCTCTGCCCTAAGATGCATACACCTTCTCAGGGGCTTTCGCTCTTTCACTAAACAATGCCACGCTGCAAAGCTATTCGCAAAGCACGTTAAGCTTCCGGAACAGATTTCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACTCCAAGCAGGATAAAGAAGCTAATTGATGCTGAAGCGTTAGACCTTTCAAGGTTGCAAGTACTCGTGCTAGATATGCATCCTGATATAAAGGGGTATTCGTTGTTGACGCTTCCACAAGTCAGGGATGAATTCATGGAGGTTTTCAAGAACTATTTTTATGAAGCGATGATCCAGGGTGGTCTGCGTATTTGTCTCTACGGGTACCAGGCGGGTGTTGGTTTAAAGGGCAAACATAAAAAAGGGCATACAGTTGCTGATACGTAA 1956 0.4923 MYPPSSSSSSSSSSSSHSMTHAPTGLTRYGSAPGSLLTTTVDALIGGSRPNPTPYYSGGDSSDSTCKDQTSYQNHALGSALLRQKSSPAGFLSHIAASAATTTNHNHNHTLNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNLVLGDHASFGMEPWDSSHSHSNSIAFSTPPPKRSKNSNSSTDQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQIVDVEVTLSKVALKSLHLGVKTKDKDKIVTVVIFAMSMNVYVRQLVSSRITSHNDLFVAYWVLSFTKNLRIAVADAHKANNLFCFTIFYANVLRSQGQRERRGGEKKVGMASEKRKRKAECDIGKKKKKKKRKEEEEAEVEEKSDEPSSEALRVLESAMGLQLSSLELESLREECILEVPNHSDVQTLGKTVKAAFGGAWREHLCEGSVVEGKVNAGSPAVLIITSSALRCIHLLRGFRSFTKQCHAAKLFAKHVKLPEQISLLKNRVNIASGTPSRIKKLIDAEALDLSRLQVLVLDMHPDIKGYSLLTLPQVRDEFMEVFKNYFYEAMIQGGLRICLYGYQAGVGLKGKHKKGHTVADT 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03221 651 Pfam U3-containing 90S pre-ribosomal complex subunit 404 630 IPR032704 -
Phco6g03221 651 MobiDBLite consensus disorder prediction 390 440 - -
Phco6g03221 651 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983
Phco6g03221 651 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 297 IPR036638 GO:0046983
Phco6g03221 651 CDD bHLH_AtbHLH_like 240 291 IPR045239 -
Phco6g03221 651 Coils Coil 406 436 - -
Phco6g03221 651 MobiDBLite consensus disorder prediction 160 188 - -
Phco6g03221 651 Gene3D - 475 590 IPR027417 -
Phco6g03221 651 MobiDBLite consensus disorder prediction 54 68 - -
Phco6g03221 651 MobiDBLite consensus disorder prediction 1 46 - -
Phco6g03221 651 Pfam Helix-loop-helix DNA-binding domain 240 286 IPR011598 GO:0046983
Phco6g03221 651 MobiDBLite consensus disorder prediction 390 410 - -
Phco6g03221 651 SMART finulus 241 291 IPR011598 GO:0046983
Phco6g03221 651 MobiDBLite consensus disorder prediction 1 68 - -
Phco6g03221 651 Gene3D - 232 294 IPR036638 GO:0046983
Phco6g03221 651 PANTHER PROTEIN CMSS1 399 630 IPR032704 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03221 Phco-Chr6 52691629 52698768 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g03221 CMS1 3e-27 CL0023