LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g03214	ATGATGATGAACAGAAACAAGGAAAGTTATTCAGATTGTGGCGAAATCAATTTTGCAGCATTTGACGTGGCGAAACGCGCCATGCAAGAAGAAAACAGCGCAGCAGGGTCGTTGTTCCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGGAACTGGGGTGCACAGATATATGCAAACCACCACAGAATCTGGTTGGGGACTTTCAAATCCGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAGCGGAGAGAGCCACAGAAACTTTCCATGGGACGATCAAACGGTGCAAGAGCCTGAGTTTCAAAGCCATTACAGCACAGAAGCAATGCTGAGCATGATTAGAGATGGCACCTACCCATCACACTTTGCTACGTTTCTCAGCACTCGTCAAACCCAACAAGGTGTTGTTGCGAAGCACATAAGTTTGAAGGGTGATGAGGAGGAGAAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGCTGACACCAAGTGATGTGGGGAAGCTCAACAGGCTTGTGATCCCAAAAAAGCATGCAGTGAGCTATTTTCCACAGGTGTGTGAGATTGCAGAAGGGCATGAAGAAAATGGCAGTGTTGACGTGGAGGTTGCGTTTTATGACAGGCTGATGAGACTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACAAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTAAAGGCGAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATTGGAGAAAAGGTGGAGAGGGAGAAGCTTTTGGATTGATTGATGTAATTTATAATTCAGATGATGAGAGAGGTTTAAAGTGTTTTGGAGAGTTGGTTTGCAGTGAGGAAGATGAAGACACCAAAGACCAAATCATTGAAAACAATTTGAATGCACAAAAGGGTTTGAGACTCTTTGGTGTTTTCATCAACTAG	978	0.4479	MMMNRNKESYSDCGEINFAAFDVAKRAMQEENSAAGSLFQKFKGVVPQQNGNWGAQIYANHHRIWLGTFKSEREAAMAYDSASIKLRSGESHRNFPWDDQTVQEPEFQSHYSTEAMLSMIRDGTYPSHFATFLSTRQTQQGVVAKHISLKGDEEEKLCCTQLFQKELTPSDVGKLNRLVIPKKHAVSYFPQVCEIAEGHEENGSVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDWRKGGEGEAFGLIDVIYNSDDERGLKCFGELVCSEEDEDTKDQIIENNLNAQKGLRLFGVFIN	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g03214	325	Gene3D	AP2/ERF domain	40	97	IPR036955	GO:0003700\|GO:0006355
	Phco6g03214	325	SMART	B3_2	163	267	IPR003340	GO:0003677
	Phco6g03214	325	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	40	322	IPR044800	GO:0003700
	Phco6g03214	325	ProSiteProfiles	AP2/ERF domain profile.	41	96	IPR001471	GO:0003700\|GO:0006355
	Phco6g03214	325	FunFam	AP2 domain-containing protein RAP2.8	40	97	-	-
	Phco6g03214	325	SMART	rav1_2	41	102	IPR001471	GO:0003700\|GO:0006355
	Phco6g03214	325	SUPERFAMILY	DNA-binding pseudobarrel domain	161	259	IPR015300	-
	Phco6g03214	325	ProSiteProfiles	B3 DNA-binding domain profile.	163	281	IPR003340	GO:0003677
	Phco6g03214	325	CDD	AP2	40	98	IPR001471	GO:0003700\|GO:0006355
	Phco6g03214	325	Gene3D	-	159	270	IPR015300	-
	Phco6g03214	325	CDD	B3_DNA	162	257	IPR003340	GO:0003677
	Phco6g03214	325	SUPERFAMILY	DNA-binding domain	41	97	IPR016177	GO:0003677
	Phco6g03214	325	Pfam	B3 DNA binding domain	163	256	IPR003340	GO:0003677
	Phco6g03214	325	Pfam	AP2 domain	41	87	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g03214	Phco-Chr6	52620708	52621685	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Phco6g03214		B3	3.7e-23	CL0405

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco6g03214	6	52620708	52621685	Phco6g03214	6	52620708	52621685	ECH