Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03206 ATGTACCTTGTCTCAATTTTGGTTCTCTGCTTTGAAGCAGGAAAAAGAACTACGGTAATTGGATTTCCTGTATGGGCAGGTTTTTTATTTAATTTAACGCCATCTGCTCTTGGAAAAATATTGGTGGACGTAAATCTCCAGTTAACAGTCAGGAAAACAGAACAGTATAATATGATTGGTGTTATAGGAAAAAGATGGACAGAAATGTTGGGTGTTGATAATTTATACTTGTGGGCACACTGGATTGTTCCGAAGTCCGTGCTCACCGAATGGCCCAGTAAGTCCAGGAATTCTCTAGATTTGAATATTTTCAAGTATATCTTTGTCAAAGTTGAGTCTGCTGGTTATCCTTCATGGGCAAAAGCATGTGAAGAGTTTCTTTTGCAATTAATAGCCTGTGTTTGTGTAGAAGATGAGAAGGGAACAGCAAGAGGGATGCCGAGCTTCAATTCACAATTGCCCAATTCCAATGCATGCTGTACAGAGGGAAGCACAGTTGATTCTTTTCGTGTGTCTGACTTTGATCAATCAGTTGGATATCGCATAGAGGATGCTGTTGCCTTGAGTGGAAACTCAATTTTTGACTCACTTAAAGTAAGTAGCCAAACAATTTCTCGAGGTCCTGTTCAACTTGGTTCCTTTGATAATTTGCCAACTTCACTTGACAAAAGCCCATTAACAAACCAAATAGAGCGGCGAAGCTTGCAATTCCAAAAGTTTCACTCATCAAATTTGGTAACTGGTGGTACAGAACACCAGGAAGAGTTTGCCATGGCTGATGCTAGTCCTAGAACTGATATTTCTACAGATGCTGACACTGACGATAAGAATCCACAGTTTGATAGAAGTCAGGCCCTTGTTGCTGCAGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAGAAAGAAAGCTTATGTTCAGCAGCTGGAAAGTAGTCGTTTAAAGCTGACCCAACTGGAGCAAGAGCTTCAACGAGCTAGGCAGCAGGGAGTCTTTATATCAAGTTCAGGTGATCAAGCGCATTCAATGAGTGGAAATGGGGCCATGGCATTTGACGTAGAATATGCAAGGTGGGTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCACGCAGGTGACACAGAACTCTGCATGATTATCGATGGTGTAATGGCACATTATGATGAGATATTTCGGCTGAAGGGCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCTGAGAGGTGTTTCCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCCCTGACGGAGCAGCAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTGGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGACAATTTGCGGCAGCAAACACTGCAACAAATTCATCGGATTTTGACAACTCGGCAATCGGCTCGTGCACTGCTTGCAATTCATGACTACTTTTCTAGGCTGCGTGCTCTCAGCTCTCTATGGCTTGCTCGCCCAAGAGACTGA 1770 0.4412 MYLVSILVLCFEAGKRTTVIGFPVWAGFLFNLTPSALGKILVDVNLQLTVRKTEQYNMIGVIGKRWTEMLGVDNLYLWAHWIVPKSVLTEWPSKSRNSLDLNIFKYIFVKVESAGYPSWAKACEEFLLQLIACVCVEDEKGTARGMPSFNSQLPNSNACCTEGSTVDSFRVSDFDQSVGYRIEDAVALSGNSIFDSLKVSSQTISRGPVQLGSFDNLPTSLDKSPLTNQIERRSLQFQKFHSSNLVTGGTEHQEEFAMADASPRTDISTDADTDDKNPQFDRSQALVAAASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDVEYARWVEEQNRQINELRAAVNSHAGDTELCMIIDGVMAHYDEIFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03206 589 Pfam bZIP transcription factor 304 344 IPR004827 GO:0003700|GO:0006355
Phco6g03206 589 CDD bZIP_HBP1b-like 304 356 - -
Phco6g03206 589 FunFam BZIP family transcription factor 303 352 - -
Phco6g03206 589 SUPERFAMILY Leucine zipper domain 304 347 IPR046347 GO:0003700|GO:0006355
Phco6g03206 589 Pfam Seed dormancy control 386 461 IPR025422 GO:0006351|GO:0043565
Phco6g03206 589 Gene3D - 303 352 - -
Phco6g03206 589 SMART brlzneu 300 363 IPR004827 GO:0003700|GO:0006355
Phco6g03206 589 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 302 346 IPR004827 GO:0003700|GO:0006355
Phco6g03206 589 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 307 322 IPR004827 GO:0003700|GO:0006355
Phco6g03206 589 Coils Coil 323 350 - -
Phco6g03206 589 PANTHER TRANSCRIPTION FACTOR TGA9 242 588 - -
Phco6g03206 589 Coils Coil 380 400 - -
Phco6g03206 589 ProSiteProfiles DOG1 domain profile. 369 586 IPR025422 GO:0006351|GO:0043565
Phco6g03206 589 MobiDBLite consensus disorder prediction 255 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03206 Phco-Chr6 52581671 52595426 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco6g03206 DOG1 3.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03206 6 52581671 52595426 Phco6g03206 6 52581671 52595426 ECH