Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03182 ATGGCATCAACTTCCGGCGTTGGTAGCAGCTCAATACCCATCAAAGATGCAGCTTCGAGCTTTCGTGCATATCCTCTTCCTCTAGCAAGATATGAGGAGGTTGTAGACAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAGTACATGATTCCTATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTCATTGAAGTGACTTCCCGAGGAGGGATTGCTAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGAGGAAGTACTATGCTTCACTGCTCTACCATTATGAACAAATCTACTTTTTTAAAGCCCGGGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAACCAATCAACCCTGGTAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGTCAGAAATTCAACCTGGTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAGCATCTTCTGCTGGGCCTCCAGTCATTGGGGTCATTGACGGGAAATTTGGAAGTGGTTATCTAGTTACGGTCACGATTGGCTCAGAGAAACTCAAAGGAGTACTTTATCAAGCTCCACAGAATCCTATATTGCACGCCTCCGATCATAACAACAACGCTTCTGCTTCAGCGGGTGTCCATCGACGGCGACGCAGGAAGAAATCAGAAATAAAAAGAAGAGATCCTGCTCATCCAAAACCAAATAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGGCACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAAACTGAAGATGGGTCAAGTTATCAGTGATGCTGTGCCCCTTCAACAACGACTCCCTGATGGAGATGCTGACATGTTGGATGTTGACTTAAAAACAGATGAAGTTGAGGCAGATTCCTTTCAAACTCCAGAAGAGAGTAGTTCTGGTGGAAGTGAATATGAAGATTATAATAAAACTGCAGAAAGAGGTTTTGATATGGATGCATTACCTGTAATAGGAATGGGTGCAGAAACAAGCTCTATGGGTTCAGAAGAGAAGTCATCCAAAGGGGGTTTATGA 1263 0.426 MASTSGVGSSSIPIKDAASSFRAYPLPLARYEEVVDNSQLFMFTLEKLHASMGTKYMIPIVGGRELDLHRLFIEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKAREWDPTAPDVLQNQSTLVVPPPKIQFPQSLSEIQPGVFQQSNVNAAKLPEAMAASSAGPPVIGVIDGKFGSGYLVTVTIGSEKLKGVLYQAPQNPILHASDHNNNASASAGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPDGDADMLDVDLKTDEVEADSFQTPEESSSGGSEYEDYNKTAERGFDMDALPVIGMGAETSSMGSEEKSSKGGL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03182 420 Gene3D - 28 135 IPR036431 GO:0003677
Phco6g03182 420 SMART bright_3 36 127 IPR001606 GO:0003677
Phco6g03182 420 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Phco6g03182 420 CDD HMG-box_AtHMGB9-like 260 326 - -
Phco6g03182 420 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 374 - -
Phco6g03182 420 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Phco6g03182 420 Pfam HMG (high mobility group) box 260 327 IPR009071 -
Phco6g03182 420 SUPERFAMILY HMG-box 248 331 IPR036910 -
Phco6g03182 420 SMART hmgende2 259 328 IPR009071 -
Phco6g03182 420 MobiDBLite consensus disorder prediction 227 267 - -
Phco6g03182 420 MobiDBLite consensus disorder prediction 240 254 - -
Phco6g03182 420 FunFam High mobility group B protein 15 29 142 - -
Phco6g03182 420 PRINTS High mobility group (HMG1/HMG2) protein signature 292 311 - -
Phco6g03182 420 PRINTS High mobility group (HMG1/HMG2) protein signature 311 331 - -
Phco6g03182 420 FunFam High mobility group B protein 15 242 337 - -
Phco6g03182 420 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Phco6g03182 420 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 260 327 IPR009071 -
Phco6g03182 420 Coils Coil 309 329 - -
Phco6g03182 420 SUPERFAMILY ARID-like 36 134 IPR036431 GO:0003677
Phco6g03182 420 Gene3D High mobility group box domain 244 338 IPR036910 -
Phco6g03182 420 SMART ARID_2 32 122 - -
Phco6g03182 420 MobiDBLite consensus disorder prediction 362 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03182 Phco-Chr6 52391414 52394838 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco6g03182 ARID 7.3e-18 CL0123