Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03181 ATGGCAGCATCTTCAGCAGAATCTGCAGTGATTGGAGTCATTGATGGGAAGTTTGAAAGTGGATACATAGTTACAGTGACAATGGGTTCGGAGACACTGAAAGGAATACTTTATGAAGTACCACAGCACCATCAAAGTGTGTCTGCTTCAATGGGTGTTCATCATCCACCACACAGTAAGAGATCAGAAATGAAAAAGAGAGTTCCTGTTCATCCAAAACATAGCAGAAGTGGGTACAATTTCTTCTTTGCTGAACAACATGCAACACTGAAGGCACTTCACCAAGGAAAGGAGGGAGAGATTCCTAGGATGATTGGTGAACTCTGGTCAAAGTTAAAAGTATCCCAAAAGATGATTTATCAAGAGATGGCAATGAAGGATAAAGAAAGGTACATGGTAGAAATGGAGGATTATGTGGAGAAACTGAAAATGGGTCCAATTATCACTGATGCTGTGCCACTTCAACAATGGCCTCCCAAACTGGACACAGACATGGTAATGGATACGAACAAAGACAGTTCAAGTGGAGAAGGCTATGAAGATTATAATAAAGCTGCAGATAGAGGTTCTGATGTGAAAGCAATGCCTCATGCAGTAATGGAGATTGAAACAAACTATTTGGGTTCAAAAGAGAACTCACCTGAGAAGGCAATCAATGAATTTCTAGCAAGTGAAGTTGCAGTTGCAGGTGGGTGTCTCATGGCGTCTCTTATTCCTCGATGCCTTCCTCCGATTCCAATTCCATCTCCAACTCAAAATCCACGAAAAGCTCATGTGGTTAAATCGAGCCTTAGCCATCAAAATGACAGCTCTGCTTCCGCTCACACAGACCCCTCCTCGAAGGAACTCCAAGTATCGTTTTCCAGGCGTCATTGTCTTTCGTGTTTGTGTTCAACTATAGTATTGATTAGTGATTATGCCGCACCTATTTTAGTTCCTAAGGCAGCCGCTGTGGATGGAATGATGGAAAAACCTGCGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTGTGACATGTGTGGTGGTACAGGAAAATGGAAAGCTCTGAACAGGAAGCGAGCTAAAGACGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTCGTCTGCCCTGTTTGTTTAGGAACCGGTTTGCCAAACAATAAAGGTCTCCTAAGGAGGCCCGATGCACGGAAACTGCTTGATAAGATGTATAATGGACGGCTAATTCCAAACTCTTAG 1236 0.4296 MAASSAESAVIGVIDGKFESGYIVTVTMGSETLKGILYEVPQHHQSVSASMGVHHPPHSKRSEMKKRVPVHPKHSRSGYNFFFAEQHATLKALHQGKEGEIPRMIGELWSKLKVSQKMIYQEMAMKDKERYMVEMEDYVEKLKMGPIITDAVPLQQWPPKLDTDMVMDTNKDSSSGEGYEDYNKAADRGSDVKAMPHAVMEIETNYLGSKENSPEKAINEFLASEVAVAGGCLMASLIPRCLPPIPIPSPTQNPRKAHVVKSSLSHQNDSSASAHTDPSSKELQVSFSRRHCLSCLCSTIVLISDYAAPILVPKAAAVDGMMEKPACRNCLGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLIPNS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03181 411 CDD HMG-box_AtHMGB9-like 72 138 - -
Phco6g03181 411 MobiDBLite consensus disorder prediction 255 279 - -
Phco6g03181 411 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 326 383 IPR036410 -
Phco6g03181 411 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 139 IPR009071 -
Phco6g03181 411 MobiDBLite consensus disorder prediction 49 70 - -
Phco6g03181 411 Gene3D High mobility group box domain 57 147 IPR036910 -
Phco6g03181 411 SMART hmgende2 71 140 IPR009071 -
Phco6g03181 411 SUPERFAMILY HMG-box 58 143 IPR036910 -
Phco6g03181 411 MobiDBLite consensus disorder prediction 249 279 - -
Phco6g03181 411 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 178 - -
Phco6g03181 411 Pfam HMG (high mobility group) box 72 138 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03181 Phco-Chr6 52381352 52386320 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco6g03181 HMG_box 3.2e-12 CL0114