Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03165 ATGCCATTTCGAGCTCGCACTGCAACAGCAAGCTTGCGGTGGTCTCTTCATTCTCTTCACCTTGGCTTCTGTTCTTTGGCTCTGTCAAAACCTCACCAGTTTTCTGCCAATTGCCACGAATTTTTGCCATGGTTGGAGCGGAAAGCTGCTTCTGCAGTTTCCTCCTCGCTTTTCATCGGGAAATCTTCGTATGGAAGGTCTCTGTTTGCTTCCAAGACAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCTGATAATCTCCCTCCTGAAATCAAATCTTTGATCGGTGAGCAAGTTGGAGATATTGCGAAACTTGCTATTGTTATTCTCACTGAGAAGAAATTGGGTCAGGACTCTGAATGGTATCCTTATATCAGCTGTCTTCCACAGCTACGGGAGCTGCACAATACGGTATTTTGGAATGAAAGTGAGTTGGAAATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCTTAAGTCTCAAATTGAAAAGGACTTTTTGACAATCAAGCGTGTTTTTGAATCTGTCCATATAAGTTTTGAAGATTTTACTTTCAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGAGTTTCAGAAGCAATTGTAATGAGTGACGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGGCTATGCCCCTGGTGAACAGGTCCTAATAAGATATGGAAAGTTTTCAAATGCTACACTAGTGCTAGACTTTGGTTTTACAGTTCCATACAACATTTACGATCAGGTCAAGATCCAGTTTGATGTACCTAAGCATGATCCTTTGCATGACATGAAGTTGGAACTCTTGCATCGAAACATTGTACCTCATCCTAAAGATATGAAGGACTTAACATATCCTGTGAATACATTCATTATCAAGGAGGTAAAGTCAGATCGAGGAAAAGGGAAGGGTCTTCCACAGTCAATTCGTGCGCTTGCTCGTGTTCTTTCTTGTACGACATTTCATGAACTTGACGATTTGGTGGAGGAAGCTGCTCAAAATGATGGCAGGCTAGCTAGGCGCCCTTTAAAGGATATCACCAAAGAGATACAAGCACACTTGATGTTGTTATCAGTATTCATCCAATTAATTGAGGAGCGCAATGAGACTATTATGTCACTGGGTTCTAGCTATTGCCCTCCCTTCTGTGAAAGACTTTTTGTTAGAAGATTAGTGGCTCAAGATCTTCTATTCGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTTTCTCTTTGACTTGTTGA 1371 0.4143 MPFRARTATASLRWSLHSLHLGFCSLALSKPHQFSANCHEFLPWLERKAASAVSSSLFIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKSLIGEQVGDIAKLAIVILTEKKLGQDSEWYPYISCLPQLRELHNTVFWNESELEMIRPSSVYQETIDLKSQIEKDFLTIKRVFESVHISFEDFTFKDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRGYAPGEQVLIRYGKFSNATLVLDFGFTVPYNIYDQVKIQFDVPKHDPLHDMKLELLHRNIVPHPKDMKDLTYPVNTFIIKEVKSDRGKGKGLPQSIRALARVLSCTTFHELDDLVEEAAQNDGRLARRPLKDITKEIQAHLMLLSVFIQLIEERNETIMSLGSSYCPPFCERLFVRRLVAQDLLFGELRILKSASAWLENYCFSLTC 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03165 456 Pfam SET domain 65 262 IPR001214 GO:0005515
Phco6g03165 456 SUPERFAMILY SET domain 38 280 IPR046341 -
Phco6g03165 456 Gene3D - 278 450 IPR036464 -
Phco6g03165 456 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 34 275 - -
Phco6g03165 456 Pfam Rubisco LSMT substrate-binding 293 407 IPR015353 -
Phco6g03165 456 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 390 - -
Phco6g03165 456 Gene3D set domain protein methyltransferase, domain 1 34 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03165 Phco-Chr6 52295021 52301768 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco6g03165 SET 8.2e-12 No_clan