Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03118 ATGATGAAGAGAGAAAGAGAAGTCGATAGTGTCACCATGGCCAACTACTTGATGTTGCTTTCCGCAGGACGTGAATTTGAGAACACAAACTACTTGAAGTACTCCTCCAACAACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTTCCATCGTTTCAGGCCTTGGGAGGGCACCGTGCAAGTCACAAGAAACCTAGGTTGATGATGGGAGAGAGTGACCATAACCAAGTGCTTCATGGTTCACCACCAAAGCCTAAGACACATGAGTGTTCCATCTGTGGTTTGGAGTTTGCCATAGGGCAAGCTTTGGGAGGACATATGAGACGCCATAGAACATCATCATCATCAAATGGAACCATGCACAATACTGCAGCTGCTACTAATTCTTTGGTGAGTGGTAGCACTGTTCATCATACTTCACCAAACGTGAACCACAAGGCTGACAACAAGAGAGTTCTGTTTCCTGATTTGAATTTGACGCCAACAGAGAATGATTTGGAGATTTTGAAGATCAGACAACCAACTCCTTTGGTTCACTGCTTCAATTGA 552 0.4475 MMKREREVDSVTMANYLMLLSAGREFENTNYLKYSSNNRVFECKTCKRQFPSFQALGGHRASHKKPRLMMGESDHNQVLHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRTSSSSNGTMHNTAAATNSLVSGSTVHHTSPNVNHKADNKRVLFPDLNLTPTENDLEILKIRQPTPLVHCFN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03118 183 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Phco6g03118 183 Pfam C2H2-type zinc finger 89 113 - -
Phco6g03118 183 Pfam C2H2-type zinc finger 40 66 - -
Phco6g03118 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Phco6g03118 183 PANTHER ZINC FINGER PROTEIN ZAT5 5 165 - -
Phco6g03118 183 SMART c2h2final6 89 111 IPR013087 -
Phco6g03118 183 SMART c2h2final6 41 63 IPR013087 -
Phco6g03118 183 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Phco6g03118 183 Gene3D Classic Zinc Finger 21 115 - -
Phco6g03118 183 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Phco6g03118 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03118 Phco-Chr6 52017334 52017885 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g03118 zf-C2H2_6 1.5e-09 CL0361