Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03103 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCCGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGTGCTAAAGATGGCAGTGCTTTTGCGCGATGCGACGATTGTAAGAAGAATGTGCCAGTTGTACTCATCGACATGCACAATTGCAGCCTTGAGGCGAAAATTAAAATGAACCTTGATGCGCAGGTTGTGGAACAGGCTGCCGAAGCTAAGAAGTTAGAGAGGAAGAAACCCAAATCTAAAGAGCCGAAGGCGAAAAAGGCTAAGACAGAGAAGGGGAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTGCCACGGCCTTCTTTGTCTTCTTGGATGATTTTAGGAAAACGTTCAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGTAAGGAGGCTGGTGAGAAGTGGAAGTCTATGACTGACGAAGAGAAGAAGCCTTATTTGGATAAAGTTGCTGAACTCAAGGCAGAATATGAGAAGGCCATGGAAAGCTATAGAGCCGGTGAAGTCGAAGAAGATCAAGCTGGATCTGATAAGGAAACTGCTGCAAAAGAAGTGGAAGAGGAGTTAACGGATGAAGAGTAG 600 0.46 MASQTRKRVDAVDSRSASVLVRAKDGSAFARCDDCKKNVPVVLIDMHNCSLEAKIKMNLDAQVVEQAAEAKKLERKKPKSKEPKAKKAKTEKGKKVKDPNKPKRPATAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYRAGEVEEDQAGSDKETAAKEVEEELTDEE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03103 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Phco6g03103 199 MobiDBLite consensus disorder prediction 84 102 - -
Phco6g03103 199 MobiDBLite consensus disorder prediction 170 191 - -
Phco6g03103 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 194 - -
Phco6g03103 199 Coils Coil 156 176 - -
Phco6g03103 199 MobiDBLite consensus disorder prediction 170 199 - -
Phco6g03103 199 SMART hmgende2 101 172 IPR009071 -
Phco6g03103 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Phco6g03103 199 Coils Coil 56 76 - -
Phco6g03103 199 FunFam high mobility group B protein 7 isoform X1 97 173 - -
Phco6g03103 199 SUPERFAMILY HMG-box 93 177 IPR036910 -
Phco6g03103 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Phco6g03103 199 MobiDBLite consensus disorder prediction 66 103 - -
Phco6g03103 199 Gene3D High mobility group box domain 85 187 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03103 Phco-Chr6 51926891 51928220 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco6g03103 HMG_box 3.7e-21 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03103 6 51926891 51928220 Phco6g03103 6 51926891 51928220 ECH