Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03101 ATGGACAGTTGTATATATATTAGTTCGTCAGATGATGACTTGGAGGAGATAGATGTTCGAAAGAGAACTGTTCCACAATGGGCTACACCTACTGAAAGGAGTTCAGATTATGGTACGCAGGATAATTCTTCAAGAGGGGCTAATAGTTCAAACCCAAGTTCTTCTAATGTTTATAATCATTCACAAATCAAACCTCATACACTACCTGTGTCCAGCACCAATGCACCCAACCACAGAAATGCACGAATTGATGAACCTTCCTACCATGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAATTTCAAATTCTCACAGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAAGATCCTTCCTTCTTCTCTTCCGCCTACTGCAACAAGGGTCCTTCCTTCTTCTTTATTTGCGTCAGACATCAGATTAAGCAAGTTAAAAGATAACACAGGCAATAGTCATCTTCATGATGCATACAAGAATCGCCGCCAGGGAGTAGGGCCTAGCACATCTGGTGACAGGGGCTACATTCGTGACAGTTTTAGCAGGGGCTTTGACGGAGATCATTTATTTTATCAAAATGGTGGGAACAGGATTCTTCCACCGTCTTTGGTGCCCGGAAAGGCCATAACTCCACACTTTGCTATTTCTAGTGAATCTGCATATCGTTCAGGAATAGCTGATGAAAGATCTTCCGAAAATGATGAGAGACTTATTTATGAGGCAGCATTACTGGATATCAGTCAACCTAAAACAGAGTATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTCGGAAAGACAATATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCGAAAACAGATGATACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGACGACAATGGTGGTATAGATGTGGAAAAGCATAAAACTAGTGTGGAATCTGATAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTAGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGGTGAAAAGCTTGATGTTTTAGTTTATCATGGGGGCAGTAGGACAAAGGATCATATTGCACTTGCAAAATATGACGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTCCCTAAGCAACCGTTAGTTGAGGAGGATGATATCGAGGACAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAACCATTTAATGGAAATAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTATTGAATGTGGTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCCCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGGAGGTGGTGCTTATCTGGAACGCCTATTCAAAACAGTATTGATGATTTGTATAGCTACTTTAGATTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATCGAGCTCAGCAAAGTAGATTTCTCAATTGAGGAGAGAGCCTTCTATACCAAGTTGGAATCAGACTCACGCTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTGATGCTCTTACGTCTTCGACAGGCTTGTGACCACCCGCGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCAGATTAATCTGTTTAATTGTTTGGACTCAACCTCTATCTGTCACATTTGCAATGATCCCCCTGAAGACCCTGTTATTACAATGTGTAGCCATGTTTTCTGTTATCAATGTGTACAGGAATATTGTTCTACTGGTGATAATACGTGCCCTGCAGTTAATTGTAAAGAAACAATCGGTACTGATCTTATTTTCTCCAAAGTTACTTTGAGGAGTTGTATCTCTGAGGATGGTGGCACTTCTAGTTCTTCAAATTCACTTCTTTGTGATTATTCGCTAGTGCAGCAGGATTATTACGTTTCATCTAAAGTCAAAGCTGTTCTTGAGGTTTTGCAGTCAAAGTGTTATGTGAAGATATCTAATTCTGACTTAGCGAACTCTGGATATTGTAGAGATTCACCGTCTTCTGATAATTTAGATGTTGATGACCGTGATTCAGATGTTAGGACTACAAAACACACAAGAAAGTATTCTGAGTCCACAACTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCGATTTGGTATACTGTACAGGAGACTCGATGGTAGGATGACTCTAGGTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCCGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACAGTGGAAGATCGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGATCTGGAGCTCGCCTTACAGTGGATGATCTGAAATATCTGTTCATGGTCTAG 3045 0.4049 MDSCIYISSSDDDLEEIDVRKRTVPQWATPTERSSDYGTQDNSSRGANSSNPSSSNVYNHSQIKPHTLPVSSTNAPNHRNARIDEPSYHAQNGNTSQQQTVNSRISNSHSADYEKMSSQQAFKKILPSSLPPTATRVLPSSLFASDIRLSKLKDNTGNSHLHDAYKNRRQGVGPSTSGDRGYIRDSFSRGFDGDHLFYQNGGNRILPPSLVPGKAITPHFAISSESAYRSGIADERSSENDERLIYEAALLDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILALRSLQSKSKTDDTCNHKTEALNLDDDDDNGGIDVEKHKTSVESDREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGGEKLDVLVYHGGSRTKDHIALAKYDVVLTTYSIVTNEVPKQPLVEEDDIEDKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGRKGIDSSIECGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELQINLFNCLDSTSICHICNDPPEDPVITMCSHVFCYQCVQEYCSTGDNTCPAVNCKETIGTDLIFSKVTLRSCISEDGGTSSSSNSLLCDYSLVQQDYYVSSKVKAVLEVLQSKCYVKISNSDLANSGYCRDSPSSDNLDVDDRDSDVRTTKHTRKYSESTTEGPIKAIVFSQWTSMLDLVETSLCRFGILYRRLDGRMTLGARDKAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03101 1014 SMART helicmild6 873 956 IPR001650 -
Phco6g03101 1014 ProSiteProfiles Zinc finger RING-type profile. 709 748 IPR001841 -
Phco6g03101 1014 Pfam SNF2-related domain 274 672 IPR000330 GO:0005524|GO:0140658
Phco6g03101 1014 MobiDBLite consensus disorder prediction 154 181 - -
Phco6g03101 1014 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 475 606 - -
Phco6g03101 1014 SUPERFAMILY RING/U-box 702 768 - -
Phco6g03101 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 1013 IPR027417 -
Phco6g03101 1014 Gene3D - 362 448 IPR038718 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 27 80 - -
Phco6g03101 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 594 IPR027417 -
Phco6g03101 1014 Pfam Zinc finger, C3HC4 type (RING finger) 709 745 IPR018957 GO:0046872
Phco6g03101 1014 Gene3D - 609 1012 IPR027417 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 825 850 - -
Phco6g03101 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 759 IPR013083 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 324 376 - -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 830 850 - -
Phco6g03101 1014 ProSitePatterns Zinc finger RING-type signature. 724 733 IPR017907 -
Phco6g03101 1014 Gene3D - 246 336 IPR038718 -
Phco6g03101 1014 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 48 1013 - -
Phco6g03101 1014 SMART ring_2 709 747 IPR001841 -
Phco6g03101 1014 CDD SF2_C_SNF 857 965 - -
Phco6g03101 1014 Gene3D - 471 607 IPR038718 -
Phco6g03101 1014 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 556 IPR014001 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 1 115 - -
Phco6g03101 1014 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 843 1009 IPR001650 -
Phco6g03101 1014 SMART ultradead3 267 573 IPR014001 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 324 359 - -
Phco6g03101 1014 CDD DEXDc_SHPRH-like 271 594 - -
Phco6g03101 1014 Pfam Helicase conserved C-terminal domain 859 956 IPR001650 -
Phco6g03101 1014 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03101 Phco-Chr6 51909555 51921610 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g03101 SNF2_N 3e-71 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03101 6 51909555 51921610 Phco6g03101 6 51909555 51921610 ECH