Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03064 ATGGCGCGCGAAAGGAACAGGCGACAAGGGAACAGAGTCACCGTTCCCGTGGATTCAAACCCCACACAGCAAAATACTCAATCTTTGGATTTTAATGCTGACTGTGAGGCCGATGAGACTAAAGCAATCGACTTCGCTGGAAAAAATGATGATGGGGCAGGAGGGTATTCTTCTGTTGCAGAAGTTGTGAAAAGGAAGCGTGACAGAAAGAGTGAAGAGGAGGAGGGTATGGGAGCGATGTTAGAGGGCAGTTTGTTGGAGAAGAACAATGGTCAAGACGAAGACCATGGTGAAAATGGTGGGGTTGGAGTTTCTTATTCTGTACAAGGCGTGAAAAAGAAGCGTGGCAGAAAGAGTAAAAAAGAGAAGGATGATATGGAAATGAAGTTGTCAGGGGGCAATTTGTTGGAAAAGAATGGTGTTCAATACGTTAACCACGGTGAAAATGGTGGGATAGGAGATTCTTCTGTTCAACGTGTGAAAAAGAAGCGTGGCAGAAAGAGTAAAAAAGAGAAGGAAGACATGGAATTGAAGATGTCAGGGGGCAATTTGTTAGAGAGGAAGGGTGGTCGAGACGTAAGCCACGGCGAAAAGGATGGGCCAGGTGGTTCTTCTTCTGTTCAAGAAGGGGTGAGAGAGAACCCTGGCAGTAATGGTGGGGTTCTTTATAAGAGACGTGGGAGAAAAAGAAAGGTTGTTAAGGAAGGTGACGACGAGTTTGAAACGCCTGCGTTTTTTTCAGGAAGGGGCATTCAGAAACAATATAGTCTTAGAAGCCCCAAAGTCAAAATAGAAGTGGTGATGCCAAAAATCAACAAGAAGGATAGTAAGCGACAGTTGACTGAAGAACAGTCCTCAATGTGCCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAAGTGTAATAGGAAAAGATTTTGCGTACCCTGTATACTAAATTGGTATCCTCATTTGGAAGAGGATTACATTGCTGAGGCATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCTGATGTACTGATTAAAGAAATGAAGAATAAAACAAAAACCAATAAAGATGAGAAGGTTGAGCTCTCTACCTATTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAATGAGACAGAAGCTAAGATACAGGGGATCTCAGTCTCAGAGCTAAATGTAGTACATGCAGATTATTCTATGAAGGAGCGTGTATATTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGATCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGCCAGCTTGTAGGTGGTGCGGATCCGATTATGTTGGAGTTTTCCTGGCAAGGTCGTGGTTACTTGCATGGTGAAAAAGTAAATGAAAGGGTAAACCAAACTGAATTAAACGATGTTGCTAAGCCTGTAGTTCGTGAATGGTCAAGATCTGGATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCAGTGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGTGTATTAGGTCAAAATTTTATTAGTGATTTACTGTGCAAAGCAAATGAACTAGCACAAACATACGAGCTTGGGACCCCTGACAACTTCTGTTTGTGTTCAAGGCTTGATAGAAACACAGATGTTAGATATAATGGTATGAGGAAGGCTGCTTCCCGTGCAGATTCCAGTGACAACTATTTGTACTGTCCTAGGGCTGTACAACTACAAGAAGAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATAGTTAGCCATGTGATTGATTCTATGTCTGGCTTAAGCTGGGAACCCCTTGTCATGTGGCGTGCATTCCGTCAGATGACTAAGACCAAGCATGAACACCATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGGTGAAATTAATATTCACCAATTCTTTACTGGGTATACAAAAGCTCGTGAAGACTGGCTTAATTGGCCTCAGATATTGAAATTAAAAGACTGGCCACCTTCTAATTTATTTGAGGAACGCCTGCCTCGACATTGTGCTGAGTTCATATCTTCCTTGCCATTCAAGGAATATACTGATCCTCTTGGTGGTTCTCTTAACCTAGCTGTGAAATTGCCTGGAAAGTGTATAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGACTCTGTGACTAAACTCCACTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTTAAATTGGAACCAAAGCATCTTACTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTACTTAGTGATGATCAGGATGGAGAAACTAATGTTGACATGCATGATAATAGATCTTCTGCCATAAATTCCTTGGAGAAGCAAAATAGTGTCCAAGTTTTGGAAAACGAAAGTGGATGTTGTGATGAGAAAGAAGATCAGTTTCATCAACCCTCTGTTGGTAGTGAGGATGCCATTGCTAGTGAGGATGGTCTTTCACGCAGATCAGAGCTCAAAGAGGTTGACAAAGTAAATATGAAGCAGGAAAGTAATTTGTCGTTTGCAGGGGATGGTTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATATGAGGAAGCATTTCAGAGAGTTTAGGCATATCCATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTTTGGAATTGAGCCCTGGACATTCATTCAGAGGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTGGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGTACACTTCCTATAAACCATGGGTCTGCTGAGGACAAATTGGAGGTGAAAAAGATGACAATATATGCTATGCAAGATGTGATAACAAAATTGGAGAAAGCAAGGTCCGAAGTAGATATACCTGTAACTGACAAAGGCGAGATACCATTTACAAACCCTATTTCCCAAACAAATAATTCAAATTCTTTCTCTTATCCAATCATTGTGTTCTCCCCGATCTCTTTGTTCGCCAAGCAATTCAGCGGGCGAGTTGATGGGTTTTGCCTAGTTGATTTGAGTCTTTGGCTGAACACAAGTTGTTCGATGAATTGTCTAACCCAAGATTTTTCTGCTTTCTATGTTATTGATTAG 3387 0.4204 MARERNRRQGNRVTVPVDSNPTQQNTQSLDFNADCEADETKAIDFAGKNDDGAGGYSSVAEVVKRKRDRKSEEEEGMGAMLEGSLLEKNNGQDEDHGENGGVGVSYSVQGVKKKRGRKSKKEKDDMEMKLSGGNLLEKNGVQYVNHGENGGIGDSSVQRVKKKRGRKSKKEKEDMELKMSGGNLLERKGGRDVSHGEKDGPGGSSSVQEGVRENPGSNGGVLYKRRGRKRKVVKEGDDEFETPAFFSGRGIQKQYSLRSPKVKIEVVMPKINKKDSKRQLTEEQSSMCHQCQRNDKGRVVRCTKCNRKRFCVPCILNWYPHLEEDYIAEACPVCRGNCNCKACLRSDVLIKEMKNKTKTNKDEKVELSTYLLQVLLPYLRLLDEEQMIENETEAKIQGISVSELNVVHADYSMKERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGADPIMLEFSWQGRGYLHGEKVNERVNQTELNDVAKPVVREWSRSGWHAESNGSIPCPKVSDECNHGFLELRSVLGQNFISDLLCKANELAQTYELGTPDNFCLCSRLDRNTDVRYNGMRKAASRADSSDNYLYCPRAVQLQEEDLGHFQWHWEKGEPVIVSHVIDSMSGLSWEPLVMWRAFRQMTKTKHEHHLDVKAIDCLDWCEGEINIHQFFTGYTKAREDWLNWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGSLNLAVKLPGKCIKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLTAIEKLKQKHFEQDKRELLSDDQDGETNVDMHDNRSSAINSLEKQNSVQVLENESGCCDEKEDQFHQPSVGSEDAIASEDGLSRRSELKEVDKVNMKQESNLSFAGDGSEGALWDIFRRQDVPKLQEYMRKHFREFRHIHCSPLKQVIHPIHDQTFYLTVEHKRKLKEEFGIEPWTFIQRLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSAEDKLEVKKMTIYAMQDVITKLEKARSEVDIPVTDKGEIPFTNPISQTNNSNSFSYPIIVFSPISLFAKQFSGRVDGFCLVDLSLWLNTSCSMNCLTQDFSAFYVID 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03064 1128 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 283 349 IPR018866 -
Phco6g03064 1128 Gene3D Cupin 588 1021 - -
Phco6g03064 1128 ProSiteProfiles Zinc finger RING-type profile. 288 335 IPR001841 -
Phco6g03064 1128 MobiDBLite consensus disorder prediction 63 77 - -
Phco6g03064 1128 SUPERFAMILY Clavaminate synthase-like 603 1037 - -
Phco6g03064 1128 SMART cupin_9 702 1013 IPR003347 -
Phco6g03064 1128 MobiDBLite consensus disorder prediction 12 30 - -
Phco6g03064 1128 MobiDBLite consensus disorder prediction 63 225 - -
Phco6g03064 1128 Pfam JmjC domain, hydroxylase 900 996 IPR003347 -
Phco6g03064 1128 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 77 1048 IPR045109 GO:0032454|GO:0033169
Phco6g03064 1128 ProSiteProfiles JmjC domain profile. 721 1013 IPR003347 -
Phco6g03064 1128 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03064 Phco-Chr6 51642718 51655381 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco6g03064 JmjC 1.2e-13 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03064 6 51642718 51655381 Phco6g03064 6 51642718 51655381 ECH