Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03062 ATGGCCATGATTGTGACGGAGGGCAACGACAGCTGCGGCAGCGGAGTGCAGCACCATACCACCTCCTCCTCCTCCTCGCCGGCGCAAACTCGTCAGCAGCGCCACAAGGTCGAAGTCTACAATGAGATTATTCGCCGCTTGAAAGATTCCGGCCACGAAGAGGCTATGCAGCCTGGCTTCAACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCTACACGGTACGCGCTGGATGTGAATGTGGAAAGGGCGGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCGCATGATCCTGCTAACAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTCCATCCCATATCTGATGGAAACTCAGCTGACGCTTTTGAATTGGATGATCCTGGGACAGAATCTGGCCAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCATTGGCTATTGAAGCAAATAGATCTGAAGACATAGAAGAGGAACAATCTGTACATGCCAATGTTCTATATTCACGTCCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACACGCCTTTTCCACAACTGATGGTTACTCATTAGACGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAATCTTAAAGCAGCTTTGGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGTTCCAGTCCGCAGTCTGTATCTTCTGTTGATGAGCCTGATCAAGCAAAGATGAAAAGCGAACTGGACCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTGTTTAAAGGTGTATACTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGCCTGAGCATGTAAATTCAGAATTGCAGAAAGAGTTTGCACAAGAAGTTTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGTTTGTGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTCCCTACCCTACTTAAAGTCGCAATTGATATTTCTAAAGGGATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGACGAAAATTGTATTGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCTGGGGTTATGACAGCAGAAACCGGAACATATAGATGGATGGCTCCGGAGGTTATAGAACACAAGCCGTACGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGCTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTGCGACCCACCATCCCAAAGAACACTCATCCAAAGTTTGTTGAACTTCTTGAGAGATCCTGGCAGCAGGATCCAACATTGAGACCCGATTTCTCTGAAATTATCGAGATCTTGCAGCAGTTAGCAAAGGAGATTGGAGATGGAGAGGAGCGGCACAAGGAAAAATCTGGAGGACTTCTGTCAGTTCTGAGACGAGGACATCACTAA 1752 0.4424 MAMIVTEGNDSCGSGVQHHTTSSSSSPAQTRQQRHKVEVYNEIIRRLKDSGHEEAMQPGFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIEVRLVQVHPISDGNSADAFELDDPGTESGQSSSKYSSRQSIHPPPAFGSSPNLEALAIEANRSEDIEEEQSVHANVLYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETENLKAALEREVLKKIERQVSSSPQSVSSVDEPDQAKMKSELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQKEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCIVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIEILQQLAKEIGDGEERHKEKSGGLLSVLRRGHH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03062 583 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g03062 583 MobiDBLite consensus disorder prediction 561 583 - -
Phco6g03062 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Phco6g03062 583 Gene3D Transferase(Phosphotransferase) domain 1 383 573 - -
Phco6g03062 583 Coils Coil 240 260 - -
Phco6g03062 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 35 558 - -
Phco6g03062 583 SUPERFAMILY ACT-like 188 252 IPR045865 -
Phco6g03062 583 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 SUPERFAMILY Protein kinase-like (PK-like) 288 553 IPR011009 -
Phco6g03062 583 CDD ACT_TyrKc 188 255 - -
Phco6g03062 583 MobiDBLite consensus disorder prediction 561 576 - -
Phco6g03062 583 ProSiteProfiles ACT domain profile. 190 271 IPR002912 -
Phco6g03062 583 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g03062 583 Gene3D - 187 261 - -
Phco6g03062 583 MobiDBLite consensus disorder prediction 131 152 - -
Phco6g03062 583 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
Phco6g03062 583 FunFam Serine/threonine-protein kinase isoform 1 294 382 - -
Phco6g03062 583 FunFam serine/threonine-protein kinase HT1 383 573 - -
Phco6g03062 583 CDD STKc_MAP3K-like 310 553 - -
Phco6g03062 583 MobiDBLite consensus disorder prediction 10 34 - -
Phco6g03062 583 MobiDBLite consensus disorder prediction 120 158 - -
Phco6g03062 583 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Phco6g03062 583 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03062 Phco-Chr6 51617113 51628843 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco6g03062 PK_Tyr_Ser-Thr 3.1e-72 CL0016