Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03037 ATGTCAATTCGATATCTGACGAACTTTCTTGATTGGTTTGGTACCTGGCTTGTGTCGGGTAGCCAGAGGTTCTCAGCATCAATTGGCACTTTTGCAGGTGACATGAACATCATCATGCAAAACTTGGTTGAAAGACTAAGATCCCTGGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTGGAGTGGTCGGGTTGCTGTTGTGGTGGCACTGAAAGCAGCCAAAATGCTGGGGAAGAACATCTTTTTCCTGTCTCTTCTGTGGTTTCATGCAGGGATACCACTTATCCACACCCCAGAACAAAGTCCTGTGATCTTCTTTCACAACTTTCCACTTCCATACCAATAGATAATTCTGGGATTCATACACAGACTCTATTAACAAACCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCTAGCATTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTTGTTGAGCTGTTTGTAACCAAACAAGTGCATGAAGACCATCAAGTAATAGATTTTGTCACAAGCCAGTGCATTGAAGCGGTGAACCACTCAATGGGCTTCAACATTGACAACTTGCAACCAAACCCACTTTTAGGCGATGAAAACGAAGGAAACAATAACAGGAACACTCATTTCCACTCTTCAGAACATGTCATCACTATGGACCACCGCATTGGCTTGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTCAACTACAACCAGCAGAACAGAATGAAGAGCGATGGCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCAAACCAACCCGGAAGAGGAGCATGACACGTATCAGAAAAGCCTCATAACAACAGATTCACAATACGTGGAGTCTTTGGACGCAAAAGAGAAGCAGGAGGAGGACAAGGAGTTGCTGAAACACGTTGCTGCTCGATCAGATTCAATGTCAGATTGCAGTGAGCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAGTCCAAGAACCTTATGGCTGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCTAAGTTGGATAGGGCCTCTATCCTTGGAGATGCTATTGAATATGTAAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACCGAAAGCAACTGCATCAATGGGAATAATGATAACAATAATCAATATGCGGGTGTAGGTGAACTGTGTCCAAATCCTGAACATGCTAAGTCCCAATCTGGGTTGCATGTGGGGACATCAGGGAATGGCTATGTGTCCAAACAAAAGCAGGAAGATGCAGCTGTCATTGACAAGCAAACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTATTCTGTGAACACAGGCCTGGTGGGTTTGTGAGATTGATGGAGTCCTTGAACACTATTGGCATGGAAGTAGTGCATGCCACGGTAACAAGCCACAAGGGCCTGGTGTCAAATGTTTTTGAAGTGGAGAAAAAGGACAGTGAAAGTGTTGAAGCTGAAGATGTAAGAGAGTCGCTGCTGGAGCTTACGAGGAACCGTTATAGAGGATGGAGCCATGAGGTGACAGCAGATTCTGAGAATGGTGTGGGAAGGGATCAACACCAGATAGCTGCATATCCCCACCATTTTCATACTTAA 1782 0.4501 MSIRYLTNFLDWFGTWLVSGSQRFSASIGTFAGDMNIIMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWSGCCCGGTESSQNAGEEHLFPVSSVVSCRDTTYPHPRTKSCDLLSQLSTSIPIDNSGIHTQTLLTNQPSWVNYSNSLDSSILDETMGTQVLISAPGGLVELFVTKQVHEDHQVIDFVTSQCIEAVNHSMGFNIDNLQPNPLLGDENEGNNNRNTHFHSSEHVITMDHRIGLCSSPLNFMQQFNYNQQNRMKSDGFSEEYQGSFLHDKQTNPEEEHDTYQKSLITTDSQYVESLDAKEKQEEDKELLKHVAARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNQYAGVGELCPNPEHAKSQSGLHVGTSGNGYVSKQKQEDAAVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVRLMESLNTIGMEVVHATVTSHKGLVSNVFEVEKKDSESVEAEDVRESLLELTRNRYRGWSHEVTADSENGVGRDQHQIAAYPHHFHT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03037 593 Coils Coil 389 419 - -
Phco6g03037 593 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 247 559 - -
Phco6g03037 593 SMART finulus 356 405 IPR011598 GO:0046983
Phco6g03037 593 MobiDBLite consensus disorder prediction 322 361 - -
Phco6g03037 593 CDD bHLH_AtAMS_like 353 418 - -
Phco6g03037 593 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Phco6g03037 593 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 191 IPR025610 -
Phco6g03037 593 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 412 IPR036638 GO:0046983
Phco6g03037 593 Gene3D - 339 415 IPR036638 GO:0046983
Phco6g03037 593 Pfam Helix-loop-helix DNA-binding domain 355 400 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03037 Phco-Chr6 51438053 51440724 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g03037 bHLH-MYC_N 8.4e-20 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03037 6 51438053 51440724 Phco6g03037 6 51438053 51440724 ECH