Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03033 ATGGCTGCTCATCCTCCCATAGACCATGCCATCCTGCCTATACGTTTCTTCAAGACCATTCTTAAATCAAATCTTCTAAGGCTTGTAAACATTCTCACTTTCACCTTTACCTATGGTTCTTCTCAGCAAATCCCCAACAAGTTTACAATCAGATATGGGGAAAACTTGTCAAATCCAGTGTTTCTCCGGCCACCTGATGGCACTCAATGGAAAGTGTACTGGACCAAACAGAAGGGTGAGATTTGGTTCGAAAAGGGTTGGAAGGAATTTGTTGAAAACTATTCCCTTGATCATGGTCACTTTGTTTTCTTTACGTTTGATGGAACTTCTAAGATTGACGTAGTCATGGTTGATCAGAGTGCCCTAGATATGCAATATCCTTCTTCTCACACTCCTGAACAAAGTGAAAGCCTTGGACACAGTGATGATGAATCATTTAAAATCTTGGATGAAGGGCCTGATTCTGACCAGCATGCTGAAGATGATGAGGTTACTGTGGGAAATTTATCATTGAATTGGCCAAGGGTAGCTAGGGCTAAGTTGTTGGCAAGAAAGTTCATCTCCTGCAATCCATTTTTCACTGTTGTCATAAGATCTTATAATCTGACAACGAACAGGCTGAATATTCCAAATTTGGAGGGTTACATTGATAAGAGGAAGAAGTATGTCACAGTGGAAGTAGGAGGAAAATCATGGAGTTTGAGGTTGGTGGGTTCTGATCGTAGACGCTTCGGTGGTGGTTGGCGAGTGTTTGCAAAGGAGAATGATTTAGAAGCAGGAGATGTTTTGAATTGGAAAGAAATGGATGCTGAGGTTTGGTTAATTGATGAATGGAAGAAATTTGCAGAATTCTTTTCTTTGGATCAGAACCATCTTCTTGTGTTCAGATATGTGGGAAAGTCACAGTTCAAGGTTGTGATACTTGATCAAGATGGCTTGGAGATAGTGTATCCTTTGATGGAAGGATCTTTAGATGGTGCAGATAATGGTAGCTCTTCTCGTCAGCGTAGAGAGCAAGATTTTCTGTACCATCTTCTCCTTCTTCTAAGAAGGACTAAAGTTGACAATGTTTATGAACGAGGTAGAAAAAGAAATAGGAGATGTTCGAGATCTAAGGTTAAGACTGAAAGTGGCACTGCTTTAGAGAGAGCCAAATCTTTCCACTCAAAGAATCCCTACTACATTCGTGTAATGCATCGATCATACATTGTAAAGAAATTCCTGATGAGGAACGAAAGGGAAACCATAGTGTTAAGTCTTTGGAATTCTGAAGACAGAAGTTGGGATGTGAACTTCCATGTTTATAGAAGCAGGAAACAAGTGTCACTAGGTTCTGGTTGGGCTGATTTTGTAGAGGACAATAACTTGAAAAAAGGAAATATATGTGTGTTTGGGAAAATTAAGGACCCAGGAGTTTCCTTTAGAGTTTTTTTTTACCGTGATCCACAGGAATCTAGTCCTTCCAACTTCTCAGCTTTTGGTAATGATGGAGCAAATGAAAGCAAACAAACTGGGCCTCAAAACACTTCTGCTGATAGGGGCAGTGATGGAGTTCCAAGGAATGTCTTTTACGATTCAAAATTTCGTGGATGCGACAATGAAATATCAGAGAATCACTTTGCCCTCAGTGTGCTTACGATTGTGTACATACCAGAACAATTAATCAGAAATCATGAGATGGAGAATGCAGCTAAGGTGGGTCTGAGAGTTGGGAATAGAACATGGCCTGTGAAGCTAGAACATTATCCAGAGAACAAATGGCATAAATTATGTTATTCTGATTGGTCTGAGTTCATGCGTGAATGTAGTGGCATTCACTTCTTCAAGAGGATTGAGGAAGACACACTTAGAAACGGAGATCTGAGAATACCTAGAAGTTTTGTGAGTAAACATTGGGAAGATATATCAAATCCACTGCGGCTTCTGCTTCCCGAAGGTGGTGAATGGAAAGTGAATTGGAAAAAAATTGGTGTTGACATATGGTTAATTGATAAATGGAAGAAATTTGTAGAGTTTTATTCTTTGGACCAAGATAATCTCTTGATCTTCAAATATGTGGGTATGTCTCAGTTTGAGGTGGTGATACTTGATCAAAGTGGCTTGGAAATTGTGTACCCTTTAATGGAAGCAAATTTAGATGCTGCAGAGAATGGTAACTCTTCATGCCAGTTTAAGAAGGGAGAATCTTCTTTACCAGGTTCTCATTTCTCCAAGAAGGTGAAAGCCAACAACAGAAGAAACCAACCTAATATCTCTACAGATGTTGAAAATATGAGAGCTCAATCTCAAAGATTTAAGGTTGAATTTCATGGTACAAAACTCCAAACAAGAGGTAGAAAAAGAAAAACTTATTCCTGTATGAAATCTTCAAACTCTAAGGGAAAAGCTATTGCAACTAAAAGTGACACTGCTTGGGAGAGAGCAAAATCTTTCCACTCTGAGAATCGCTTCTTCATTCGCGAAATGAATCCATCATATATTCAAAGAAATATTATGGTGATGCCGGGTAATATCATAACAAAAGAAGAAGAAGAGGAGCATGGCAGTGAAAATGTCACTCTTTGGACATCTGAAGAAGACAGACATTGGCTTGTTCATTTTTATCGGAATTATAGCAGTGGCCAAATAAGTCTTACTTCTGGTTGGAAACATTTTGCAAAAGATCATAACTTGCAAATGGGGGATGTATGTGTTTTTGAGAAAATTAAGAAATCGGGAATTTCATTCAGAGTTTTTATTTACAGTAACAAACAAGAACCAAGTTCTCCTAAGTTTTCAGATTATGAAACTCCTAAATGCAACAACATGGTAGTAGAGAATCACTTCAGTGTCTGCATCAATGATAAGCAACTCTATGCTGTGAAAGTTCCAAAGATTTTCTTTGAAAATCATGGTATTGCTAAATCAACTGAAGTGATCCTGCAACTTGGGAAGAGATCATGGAATGTGAAGCTAGACCCTTACTGTAGATTCACTAAGGGTTGGAATGATTTTATGAGAGAATGCAGATTGAAGGGTGGAGATATTTGTGTGTTAGAGTTGATTGATAAGAAGAAGATTGTGTTTGAAGTTAGCATTCTAGCATGCATAGAGTGA 3096 0.3857 MAAHPPIDHAILPIRFFKTILKSNLLRLVNILTFTFTYGSSQQIPNKFTIRYGENLSNPVFLRPPDGTQWKVYWTKQKGEIWFEKGWKEFVENYSLDHGHFVFFTFDGTSKIDVVMVDQSALDMQYPSSHTPEQSESLGHSDDESFKILDEGPDSDQHAEDDEVTVGNLSLNWPRVARAKLLARKFISCNPFFTVVIRSYNLTTNRLNIPNLEGYIDKRKKYVTVEVGGKSWSLRLVGSDRRRFGGGWRVFAKENDLEAGDVLNWKEMDAEVWLIDEWKKFAEFFSLDQNHLLVFRYVGKSQFKVVILDQDGLEIVYPLMEGSLDGADNGSSSRQRREQDFLYHLLLLLRRTKVDNVYERGRKRNRRCSRSKVKTESGTALERAKSFHSKNPYYIRVMHRSYIVKKFLMRNERETIVLSLWNSEDRSWDVNFHVYRSRKQVSLGSGWADFVEDNNLKKGNICVFGKIKDPGVSFRVFFYRDPQESSPSNFSAFGNDGANESKQTGPQNTSADRGSDGVPRNVFYDSKFRGCDNEISENHFALSVLTIVYIPEQLIRNHEMENAAKVGLRVGNRTWPVKLEHYPENKWHKLCYSDWSEFMRECSGIHFFKRIEEDTLRNGDLRIPRSFVSKHWEDISNPLRLLLPEGGEWKVNWKKIGVDIWLIDKWKKFVEFYSLDQDNLLIFKYVGMSQFEVVILDQSGLEIVYPLMEANLDAAENGNSSCQFKKGESSLPGSHFSKKVKANNRRNQPNISTDVENMRAQSQRFKVEFHGTKLQTRGRKRKTYSCMKSSNSKGKAIATKSDTAWERAKSFHSENRFFIREMNPSYIQRNIMVMPGNIITKEEEEEHGSENVTLWTSEEDRHWLVHFYRNYSSGQISLTSGWKHFAKDHNLQMGDVCVFEKIKKSGISFRVFIYSNKQEPSSPKFSDYETPKCNNMVVENHFSVCINDKQLYAVKVPKIFFENHGIAKSTEVILQLGKRSWNVKLDPYCRFTKGWNDFMRECRLKGGDICVLELIDKKKIVFEVSILACIE 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 189 263 IPR015300 -
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 811 915 IPR015300 -
Phco6g03033 1031 MobiDBLite consensus disorder prediction 485 515 - -
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 389 480 IPR015300 -
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 271 318 IPR015300 -
Phco6g03033 1031 CDD B3_DNA 816 915 IPR003340 GO:0003677
Phco6g03033 1031 PANTHER B3 DOMAIN-CONTAINING 828 1022 - -
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 817 917 IPR003340 GO:0003677
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 192 278 IPR003340 GO:0003677
Phco6g03033 1031 MobiDBLite consensus disorder prediction 125 160 - -
Phco6g03033 1031 CDD B3_DNA 392 480 IPR003340 GO:0003677
Phco6g03033 1031 CDD B3_DNA 192 309 IPR003340 GO:0003677
Phco6g03033 1031 MobiDBLite consensus disorder prediction 136 160 - -
Phco6g03033 1031 CDD B3_DNA 15 110 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 954 1020 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 43 111 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 192 266 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 608 696 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 817 912 IPR003340 GO:0003677
Phco6g03033 1031 Pfam B3 DNA binding domain 399 469 IPR003340 GO:0003677
Phco6g03033 1031 Gene3D - 797 918 IPR015300 -
Phco6g03033 1031 Gene3D - 175 267 IPR015300 -
Phco6g03033 1031 Gene3D - 929 1030 IPR015300 -
Phco6g03033 1031 Gene3D - 373 482 IPR015300 -
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 25 119 IPR015300 -
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 606 699 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 394 480 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 942 1030 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 31 120 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 192 278 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 607 699 IPR003340 GO:0003677
Phco6g03033 1031 SMART B3_2 818 917 IPR003340 GO:0003677
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 952 1027 IPR015300 -
Phco6g03033 1031 SUPERFAMILY DNA-binding pseudobarrel domain 606 706 IPR015300 -
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Phco6g03033 1031 CDD B3_DNA 606 697 IPR003340 GO:0003677
Phco6g03033 1031 Gene3D - 268 312 IPR015300 -
Phco6g03033 1031 Gene3D - 603 700 IPR015300 -
Phco6g03033 1031 Gene3D - 14 121 IPR015300 -
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 939 1030 IPR003340 GO:0003677
Phco6g03033 1031 MobiDBLite consensus disorder prediction 485 518 - -
Phco6g03033 1031 ProSiteProfiles B3 DNA-binding domain profile. 418 482 IPR003340 GO:0003677
Phco6g03033 1031 CDD B3_DNA 956 1027 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03033 Phco-Chr6 51408773 51416183 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco6g03033 B3 2.9e-14 CL0405