Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03032 ATGGCTTCTCATTGTCCCGGGGGAGATGCTACCCTGCCAATCTACTTCTTCAAAGTTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCCAACAAATTCAGTAGCAAATATGGAAGTGGCTTGCCAAATCCCTTGTTCATCAAGCCTCCAAATGGAACAGAATGGAAAGTGAATTGGGCAAAAGACAACGGTGAGATTTGGCTGGAAAAGGGTTGGAAAGAATTTGTGGAACATTATTCCCTAGACCAAGGACATTTTATTTTCTTTAAATATGAAGGAACTTCCCAGATTCATGTAATCATACTTGACCAAAGTGCCCTAGAAATAGACTATCCTTGTGGCACTGGAGATGAAAACGACAACCTTGTTAAAACCGAGGAGGAATCCAACATGATTATGGATGAAGGGCAAGATGTGAAGGATGAACAAATAAGGGGTGAGAAGTCTGGTGAAAGAACTTCATCTTTGAACAGGCCTACGCAAACTAGAGCACGGGAAGTAGCATGCAACTTCGTCTCATGCAATCCCTTTTTCACTGTTTTCATAAGACCTGCTCATGCGACAACATATCGGCTGAGCGCACCAGATTTGAGAGGCATTATTGGGAAGAAGGAGAGGTATGCGGTGCTGGTGCTCGGAGAAAGATCGTGGAAAGTAAAGTTGATTGCTAGTAATAACAGCTATTTTTCACATCACAGGTTCACTGCTGGGTGGTACTTGTTTTTACGTGAGAGTGAATTGCAATCAGGAGACGTTTGTGTATTTGAACTGATTAGCAAAGAGGAATGTGTTTTTAAAGTTCATGTTTTCAAAAATCACAGCTAA 828 0.4094 MASHCPGGDATLPIYFFKVILKTNLERLKIPNKFSSKYGSGLPNPLFIKPPNGTEWKVNWAKDNGEIWLEKGWKEFVEHYSLDQGHFIFFKYEGTSQIHVIILDQSALEIDYPCGTGDENDNLVKTEEESNMIMDEGQDVKDEQIRGEKSGERTSSLNRPTQTRAREVACNFVSCNPFFTVFIRPAHATTYRLSAPDLRGIIGKKERYAVLVLGERSWKVKLIASNNSYFSHHRFTAGWYLFLRESELQSGDVCVFELISKEECVFKVHVFKNHS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03032 275 SUPERFAMILY DNA-binding pseudobarrel domain 175 273 IPR015300 -
Phco6g03032 275 CDD B3_DNA 178 272 IPR003340 GO:0003677
Phco6g03032 275 Gene3D - 13 107 IPR015300 -
Phco6g03032 275 Pfam B3 DNA binding domain 23 103 IPR003340 GO:0003677
Phco6g03032 275 Pfam B3 DNA binding domain 200 272 IPR003340 GO:0003677
Phco6g03032 275 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Phco6g03032 275 MobiDBLite consensus disorder prediction 130 161 - -
Phco6g03032 275 SMART B3_2 178 274 IPR003340 GO:0003677
Phco6g03032 275 SMART B3_2 16 106 IPR003340 GO:0003677
Phco6g03032 275 Gene3D - 158 274 IPR015300 -
Phco6g03032 275 CDD B3_DNA 15 104 IPR003340 GO:0003677
Phco6g03032 275 PANTHER B3 DOMAIN-CONTAINING 15 270 - -
Phco6g03032 275 ProSiteProfiles B3 DNA-binding domain profile. 216 274 IPR003340 GO:0003677
Phco6g03032 275 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Phco6g03032 275 MobiDBLite consensus disorder prediction 130 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03032 Phco-Chr6 51404713 51405920 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco6g03032 B3 6.3e-10 CL0405