Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03018 ATGGCCACATCATCTTCCTCAGCATCACTCTTTGGATTTAGAGAAGACGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCGTCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAGCCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACATAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTTGGAGACCTAACAGGGATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGTACACTCTTCTCCAGGAGAGACAGCTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCAAACCTTGGCGCCGCCATTGGCACCCACCTCTTCGGAACCACCGCCAACAACATCCCTCTAAACCTTTCTCAGGTTGCTTCTCACATCTCCAACATCCAAGACCCCAGCACCCAACCAACAGAACTCCTCCGCCTAGGTGGCGCCGCCGCCGCCAGAACCGCCCAATTCGACCACCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACAACCCTTCTTCATCGAACCTAACCAAAGCTACCACTCCGACCAACAACAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTAATGCAACTCTCTGATCACCTCAGCAACAACAGCAACTCACCCTTCAACCTTCCCTTCCTTTCAAACACCACCACCACCAATGCTTCATTCTCAGAAAACTTCAACAATGCCAACAACAACAGCAGCAGCAACAACAACGAGGGCACTAACTTCTTCACAACTTCAAGCGCTCCTTCTCTCTTCAGCAACAACGCTGTCAGTGCAAACGCCAATGCCAACGCACTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCTGCACAAATGGGTGCATCTTCGAGCAACAGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGCCACTGGTGAATGCTGCAAACTACGGTGGCGGGATCTTCGGAGGGAACGTGAACGAACAGAGTAACAGCAACCTGCAAGACTTGATGAACTCGTTCGCTGTTAGTGGAAACTCTTCCATTTTCGAAGGTGGGTTTGAAGCATATGATCACAACAGTAATAATAACAACAGGGAGGGAAAAGTGCATGCAATGAGCGGAAGCAGCAGCATTGGAGGGTCTGATAGACTCACCCGAGATTTTCTGGGTGTGGGTCAGATAGTCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGAGGAAAATGATCCAACAAAGTACAATACAAAGGGATTTGAAGTGGCTCCATTGAAACTTGACTCTTCAGTTGATCTAATTAAGGGTTTGTAA 1671 0.4883 MATSSSSASLFGFREDDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGAAIGTHLFGTTANNIPLNLSQVASHISNIQDPSTQPTELLRLGGAAAARTAQFDHLLGSPFRPSQQQQPFFIEPNQSYHSDQQQQQGLLQNKPFQQGLMQLSDHLSNNSNSPFNLPFLSNTTTTNASFSENFNNANNNSSSNNNEGTNFFTTSSAPSLFSNNAVSANANANALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAANYGGGIFGGNVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNSNNNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVKLLEVVEGIFSEENDPTKYNTKGFEVAPLKLDSSVDLIKGL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03018 556 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 522 IPR031140 -
Phco6g03018 556 SMART c2h2final6 112 142 IPR013087 -
Phco6g03018 556 SMART c2h2final6 71 93 IPR013087 -
Phco6g03018 556 SMART c2h2final6 147 167 IPR013087 -
Phco6g03018 556 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Phco6g03018 556 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Phco6g03018 556 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Phco6g03018 556 Gene3D Classic Zinc Finger 54 119 - -
Phco6g03018 556 FunFam protein indeterminate-domain 12-like 50 118 - -
Phco6g03018 556 MobiDBLite consensus disorder prediction 1 32 - -
Phco6g03018 556 MobiDBLite consensus disorder prediction 1 55 - -
Phco6g03018 556 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Phco6g03018 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Phco6g03018 556 Gene3D Classic Zinc Finger 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03018 Phco-Chr6 51277827 51283715 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g03018 zf-C2H2_jaz 3.4e-05 CL0361