Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03000 ATGACTTCTCATCTTGGTCAAAGAAGTGCAACCATACCAATCCATTTTTTCAAGATTATTCTTGAAACTAATGTTGAAAGGATAAAACTACCCAACAAGTTCACAAATAGATATGGGGGTTCTTTGCCAAATCCAGTGTCTCTTAGGTCTTCAGACTTCAAGGAATGGGTAGTGTATTGGACAGAAAAGAATGGTGAGGTTTGGTTTGAAAAGGGTTGGAAAGAGTTTGTTGAAAACTATTCCTTAAGTTATGGATATTTTGTGGTGTTCAAGTACAAAGGAACCTCCCAAATTGATGTACTCATACTTGATAAAAGTGCCCTAGAATTAGATTATTTGTCTTCTGCTAATGGATCAGTTAACCCCGTGAATGCAACCGAGAAGGAGAAAAATGCAAGACCAATGCCACCATCAATGGTTTCTTCTCATCAAGTTTTTGAAGAAACCCTAATGGGTAATATGGAAAGGGACTCCATTGTACAACGAGTGCATGCTGATAAGGGTGTTCCTTCTGATAAAGGGACACATGTTCAACAATTAATCAGGCCCCAATGTGTGAACCCAACTCAGAGTGGAAATTGTTTGAATCTGCCAAGAACACTAAGAGCTCGAAAAATAAGCAAAAGATTTAAATCAAGACATGCCTATTTCACTCTTGTGATAGAGTTGTCTAACTTAGAAGAAAATGCTTCGAAGTATGTGCCCAAGTTTTTGGATAACATAAGCAGCGAGAAGAATGTGGTGTTGCAGATGGCGAATAGGTCCTCGTACGCTTGGTATGTGAAGTTACTCAGTGGTGGGGAAAGATATGATCGGTTCACTTCTGGTTGGTCTATCTTTGCAAAAGAGAGTAAATTGGAAGCTGGTGACATTTGTATCTTTGAGTTGGTTGAACCTGCAGGTCCACTGCTTCGAGTTCATGTTTTCAGAGGCTAG 936 0.3942 MTSHLGQRSATIPIHFFKIILETNVERIKLPNKFTNRYGGSLPNPVSLRSSDFKEWVVYWTEKNGEVWFEKGWKEFVENYSLSYGYFVVFKYKGTSQIDVLILDKSALELDYLSSANGSVNPVNATEKEKNARPMPPSMVSSHQVFEETLMGNMERDSIVQRVHADKGVPSDKGTHVQQLIRPQCVNPTQSGNCLNLPRTLRARKISKRFKSRHAYFTLVIELSNLEENASKYVPKFLDNISSEKNVVLQMANRSSYAWYVKLLSGGERYDRFTSGWSIFAKESKLEAGDICIFELVEPAGPLLRVHVFRG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03000 311 CDD B3_DNA 15 104 IPR003340 GO:0003677
Phco6g03000 311 Pfam B3 DNA binding domain 229 310 IPR003340 GO:0003677
Phco6g03000 311 Pfam B3 DNA binding domain 26 98 IPR003340 GO:0003677
Phco6g03000 311 Gene3D - 11 107 IPR015300 -
Phco6g03000 311 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Phco6g03000 311 CDD B3_DNA 231 310 IPR003340 GO:0003677
Phco6g03000 311 Gene3D - 181 311 IPR015300 -
Phco6g03000 311 PANTHER B3 DOMAIN-CONTAINING 14 299 - -
Phco6g03000 311 SMART B3_2 16 106 IPR003340 GO:0003677
Phco6g03000 311 SMART B3_2 216 310 IPR003340 GO:0003677
Phco6g03000 311 ProSiteProfiles B3 DNA-binding domain profile. 217 311 IPR003340 GO:0003677
Phco6g03000 311 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Phco6g03000 311 SUPERFAMILY DNA-binding pseudobarrel domain 211 310 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03000 Phco-Chr6 51159622 51160992 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco6g03000 B3 1.8e-10 CL0405