Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02991 ATGTTTCACGAGAGCAGCGTGACTCGGTGGCAGGCTCAGCCGGTTCAGCCCACTGAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGCGCTCTGCTCCTCGTGCCGGAGGACCTCCCCGACCGCTGGAACCAGATTGCCGGCCACGTTCCCGGTATGTCGCCGGCGGAGGTCAGGGAACACTACGACGCCCTCGTCCACGACGTCTTCGAGATCGACTCTGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGCGCCGCAACTAAGTGGCGGTGCCGGGAATTCTGCGTGGGACAGCGCTAATCAGATCTCATTCGGATCCAAACCCAAGCAGGGCGATAGCGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACATAGGCTGTTTCTGATTGGGCTGAGTAAATTTGGAAAGGGAGATTGGAGAAGCATTTCAAGAAACGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGTCATGCTCAGAAATACTTCCTTCGCCAGAATTCAGGGAAGAAGGAGAGGAAAAGATCAAGCATCCATGACATAACCACAGTGGACAGTAACTCTCTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCTGGTGCTTCAATGCAGCAGTCACAAGACATGCTGCCGTACCCTTCCAGCAACATGCATGATCAAATGGGTCCATTTGGGTATTCGAGCTATGGCTTTGAAATGTAA 723 0.538 MFHESSVTRWQAQPVQPTEWTRYHDKLFERALLLVPEDLPDRWNQIAGHVPGMSPAEVREHYDALVHDVFEIDSGRVEVPSYVDDSAPQLSGGAGNSAWDSANQISFGSKPKQGDSERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSLPVPIDQNWVPPPGASMQQSQDMLPYPSSNMHDQMGPFGYSSYGFEM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02991 240 ProSiteProfiles SANT domain profile. 119 172 IPR017884 -
Phco6g02991 240 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 227 IPR043363 -
Phco6g02991 240 SMART sant 120 170 IPR001005 -
Phco6g02991 240 SMART sant 16 68 IPR001005 -
Phco6g02991 240 Gene3D - 15 79 - -
Phco6g02991 240 MobiDBLite consensus disorder prediction 90 111 - -
Phco6g02991 240 Gene3D - 122 173 - -
Phco6g02991 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Phco6g02991 240 FunFam transcription factor MYB1R1 122 173 - -
Phco6g02991 240 CDD SANT 19 62 IPR001005 -
Phco6g02991 240 CDD SANT 123 168 IPR001005 -
Phco6g02991 240 FunFam Transcription factor SRM1 12 79 - -
Phco6g02991 240 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Phco6g02991 240 SUPERFAMILY Homeodomain-like 118 172 IPR009057 -
Phco6g02991 240 MobiDBLite consensus disorder prediction 85 124 - -
Phco6g02991 240 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Phco6g02991 240 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 171 IPR006447 GO:0003677
Phco6g02991 240 SUPERFAMILY Homeodomain-like 15 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02991 Phco-Chr6 51122607 51124124 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g02991 Myb_DNA-binding 4.4e-11 CL0123