Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02924 ATGGCAGCAATACTCTCTCACCTCACTCGTGTTCTGGTTTTTCATTTTCTTCTTCTCACTGTTCAAGGTTCCAATAACCCAGATTTCGACGCTCTCGTGGCCTTCAAAACCGCTTCAGACGCTTCTCAGAAGCTCACAACATGGAACACCAGCAGTACCAACCCCTGTTCCTGGAGCGGCGTCTCGTGCATTCGCGACCGAGTCTCGCGACTCGTTCTCGAAAACCTCGACCTCCAAGGCTCCATTCATCCCTTGACTTCTTTAACTCAGCTCCGAGTTCTCAGTCTCAAAGGAAACCGTTTCTCCGGTCCCGTTCCCAACCTCTCCAACCTCACCGCCCTCAAACTCCTCTTTTTGTCTCGCAACGCCTTCTCCGGCGAGTTTCCGGGCACCGCCACGTCGCTCTTCCGCCTCTACCGACTCGATCTGTCCAACAATAACTTCTCCGGTGAGATTCCGGCGACGGTCTCCCATCTGACCCACCTCCTCACTCTCCGCCTCGACGGGAACGATTTCTCTGGCCACATTCCCGACGTCAACCTCCCCGATCTCCAAGAATTCAACGTCTCCGGAAACCGCCTCTCCGGCGAGATACCCAAAGCATTATCAAGTTTCCCCGAATCCTCATTCGGACAAAACCAGTTTCTCTGCGGTGCCCCAGTTAAAAAATGCGCATCCGACCCAACCAAACCCGGATCAGAAGGCGCCATTGCTTCGCCGTTGTTACCACATAACAATAACAACAACAACCCTACAACTACCGTATCATCTTCACCAAGTTCAATGCCAAAAACGTCCACACCAATGTCAAGTAGTAAAAGTCACGAGAAGGGTGCTTCTAAAATCGGCCCGGTGGCACTTATAGCTATTATAGTAGGTGATGTTTTGGTTCTTGCAATAGTGTCATTGCTTTTGTATTGTTACTTCTGGAGAAACTACAAGTTAAAGGAGGGGAAAGGGTCGAAGCTTTTTGAGAGTGAGAAGATCGTGTATTCGTCGAGTCCGTACCCTGCTCAGGGAGGGTTTGAGAGGGGGCGCATGGTGTTCTTCGAGGGTGAGAAAAGGTTTGAACTTGAGGACTTGCTGCGAGCCTCTGCGGAAATGCTTGGAAAGGGCGGGTTTGGGACCGCGTACAAGGCAGTGCTCGATGATGGTAACGTGGTTGCGGTGAAGAGGCTGAAGGACGCGCAGATTACAGGGAAGAGGGAGTTCGAGCAACACATGGAGGTGTTGGGAAGGTTAAGGCATCCAAATGTTGTTAGTTTGAGAGCTTACTATTTTGCGCGCGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTGCTTCACGGAAACAGAGGACCCGGACGAACCCCACTGGACTGGACCACAAGGCTGAAGATAGCAGCGGGAGCCGCGAGAGGCGTGGCTTTCATTCATAACTCGTGCAAGTCCCTTAGACTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCAGGGCAACGCGCACGTGTCTGATTTTGGGCTCTCGGTTTTCGCGGGCCCAGGCCCATTGGGTGGGAGACCCAACGGCTACCGCGCGCCGGAGGCATCGGATGGTCGAAAACAGACCCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTGCTGGAGATGCTGACAGGAAAGTGCCCCTCCGTGGTGGAGAGTGCAGGCAGTGCTTACGGTGGGGTGGTGGACCTACCAAGGTGGGTCCAGTCAGTGGTGAGGGAGGAATGGACGGCTGAAGTGTTTGATTTGGAGCTGATGAGGTATAAAGATATTGAGGAGGAGATGGTGGGGCTGCTTCAGATAGCAATGACGTGTACCGCTGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTCGTGAAGATGATCGAGGAGTTGCGTGGGGTGGAGGTGTCGCCGTGTCATGACTCGACGGACTCTGTTTCCGAGTCACCTTCCATGTCTGAAGATGCGTGTGGAACGAGTCAGTGA 2010 0.5318 MAAILSHLTRVLVFHFLLLTVQGSNNPDFDALVAFKTASDASQKLTTWNTSSTNPCSWSGVSCIRDRVSRLVLENLDLQGSIHPLTSLTQLRVLSLKGNRFSGPVPNLSNLTALKLLFLSRNAFSGEFPGTATSLFRLYRLDLSNNNFSGEIPATVSHLTHLLTLRLDGNDFSGHIPDVNLPDLQEFNVSGNRLSGEIPKALSSFPESSFGQNQFLCGAPVKKCASDPTKPGSEGAIASPLLPHNNNNNNPTTTVSSSPSSMPKTSTPMSSSKSHEKGASKIGPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGSKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNVLLDKQGNAHVSDFGLSVFAGPGPLGGRPNGYRAPEASDGRKQTQKSDVYSFGVLLLEMLTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDSTDSVSESPSMSEDACGTSQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02924 669 MobiDBLite consensus disorder prediction 645 669 - -
Phco6g02924 669 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Phco6g02924 669 SUPERFAMILY L domain-like 37 220 - -
Phco6g02924 669 Gene3D Phosphorylase Kinase; domain 1 343 438 - -
Phco6g02924 669 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Phco6g02924 669 ProSiteProfiles Protein kinase domain profile. 363 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02924 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 641 IPR046959 -
Phco6g02924 669 Gene3D Ribonuclease Inhibitor 87 231 IPR032675 -
Phco6g02924 669 Gene3D Ribonuclease Inhibitor 21 86 IPR032675 -
Phco6g02924 669 MobiDBLite consensus disorder prediction 648 669 - -
Phco6g02924 669 MobiDBLite consensus disorder prediction 240 277 - -
Phco6g02924 669 FunFam pollen receptor-like kinase 1 336 438 - -
Phco6g02924 669 FunFam Leucine-rich repeat receptor-like protein kinase 25 178 - -
Phco6g02924 669 Gene3D Transferase(Phosphotransferase) domain 1 439 656 - -
Phco6g02924 669 Pfam Protein kinase domain 367 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02924 669 SUPERFAMILY Protein kinase-like (PK-like) 367 636 IPR011009 -
Phco6g02924 669 CDD STKc_IRAK 369 639 - -
Phco6g02924 669 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 439 646 - -
Phco6g02924 669 MobiDBLite consensus disorder prediction 228 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02924 Phco-Chr6 50338693 50341411 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco6g02924 Pkinase 1.9e-33 CL0016