Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02910 ATGATTTCCATCCAAAACGCCCTCTATTTTATCCTCAAACCCCTCTCATCTCCCATCACCCATTCCAGCATCATCATCTACTGTCTCCTTGCCCAAATCACTTCCTGTCAAGTCGACCCTAAATTCCTTGCATGTGCACCCAAAACCTGCCCCAACAGCAACCAAAGTATAAGCTTTCCCTTTTACATCCAGGGAACACAAGAACCTTATTGTGGGAACCCTGGTTTTGAAATCTCTTGTGCTCCACATGGCCTCCCTATCCTCAATCTCTCTCACACCCAATACTTCATTCGTCAAATTTTCTACCAAAATCAATCCCTGCGAGTGTCCAATGCTGCCTTCTCATCTATGCAATCAAACACCACCAAAGGTTGTCTTGTTCCAACTCAGAATCTCACTCTTCCTACTACTAACGTGTTCCGTGTTGCTCCCAATCACACGGACGTGGTATTATTCTACGGCTGTGACGCATCTTCACTTGACGAGCAGAGAGTTGGGTGTTCTGCAGAAAACGAAACGAGTTCAGTTTTGGCATTGGATAAAAGGGATAAAAATGTAAGCTTTGTGGCAAAGAATTGCAAGGGTGGGGCGGTGGATACGGTGGTGGAAGATGGGTCAGAAGGGGTTGGTGAAGCTTTGAGAAAAGGATGTCCATATGCTGATGATTCAGGGGTTGTTGGAATTGTAGTGCTGGTGATCTTGGTATGTTGGTTTAGGACAAAGATCTTCTTTCCCTCATGTCTCTTATTTTGGAGGGAGAATCCAACCCATAATGTTATTCAGGAGTTTTTGAAGGAACAAGGACCTCTTCCTATAACGAGGCACAATTATTCAGAGATTAAGAAAATGACCAACTCTTTTAAAAACAAGTTAGGACAAGGAGGCTTCGGTAGCGTATATAAAGGGAAGTTGCATGATGGATGTGTTGTTGCAGTCAAGATTTTAGTTGAATCAAAAGGCAACGGACAAGAATTTATCAATGAAGTGGCAAGTATTAGTACAACTTCACATGTTAATATTGTCAGACTTCTGGGATTTTGTTTTCAAGGTTCTAAACGTGCTCTAATATATGAGTTTATGACAAATGGATCTCTTGACAAGTTCATATATGAGCAGAAAAATTCATTACAGGTTGCTCATCAATTGGATTGCAATATATTATATAATATTGCGATTGGCATTGCTCGTGGATTAGAGTATTTACATAGAGGTTGCAACACCAGAATCTTACATTTTGACATAAAACCTCATAACATATTACTAGATGAGAATTTTAATCCGAAAATTTCTGATTTTGGATTAGCAAAAATATGTCCAAGAAAAGAAAGTGCGATATCCATTACTTGTGCAAGGGGAACTGTAGGTTATATTGCTCCAGAAGTTTTTTCCAGGAACTTTGGTGTTGTGTCACATAAATCAGATGTTTACAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAAGTTGAAGTCAATCATTCAAGTGAATTGTATTTTCCTCATTGGATTTATGATCGTCTTGAGTCAAATCATGAGCTTGATCTACAGATTGTGAAAAATGAAATTGATGAGAAAATGATGAGAAAAATGGCTTTGGTAGGTTTATGGTGTATACAAACCCACCCCTCAACTCGACCAACCATAAGTAGTGTGGTGGAAATGTTAGAAAACAGAGTTGAATTGCAACTTCCACCTAAACCGTTTTTGTCTTCTCCTTCACCATCTCCAGTTCATTTGTCATCTTCGGTTAATTTGTCACACTAG 1779 0.3924 MISIQNALYFILKPLSSPITHSSIIIYCLLAQITSCQVDPKFLACAPKTCPNSNQSISFPFYIQGTQEPYCGNPGFEISCAPHGLPILNLSHTQYFIRQIFYQNQSLRVSNAAFSSMQSNTTKGCLVPTQNLTLPTTNVFRVAPNHTDVVLFYGCDASSLDEQRVGCSAENETSSVLALDKRDKNVSFVAKNCKGGAVDTVVEDGSEGVGEALRKGCPYADDSGVVGIVVLVILVCWFRTKIFFPSCLLFWRENPTHNVIQEFLKEQGPLPITRHNYSEIKKMTNSFKNKLGQGGFGSVYKGKLHDGCVVAVKILVESKGNGQEFINEVASISTTSHVNIVRLLGFCFQGSKRALIYEFMTNGSLDKFIYEQKNSLQVAHQLDCNILYNIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICPRKESAISITCARGTVGYIAPEVFSRNFGVVSHKSDVYSYGMMILEMVGRRKNIKVEVNHSSELYFPHWIYDRLESNHELDLQIVKNEIDEKMMRKMALVGLWCIQTHPSTRPTISSVVEMLENRVELQLPPKPFLSSPSPSPVHLSSSVNLSH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02910 592 Pfam Protein kinase domain 288 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02910 592 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Phco6g02910 592 FunFam serine/threonine-protein kinase PBS1-like 256 359 - -
Phco6g02910 592 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 576 IPR045874 GO:0004672
Phco6g02910 592 Pfam Wall-associated receptor kinase galacturonan-binding 45 110 IPR025287 GO:0030247
Phco6g02910 592 MobiDBLite consensus disorder prediction 578 592 - -
Phco6g02910 592 Gene3D Transferase(Phosphotransferase) domain 1 360 571 - -
Phco6g02910 592 ProSiteProfiles Protein kinase domain profile. 285 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02910 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Phco6g02910 592 MobiDBLite consensus disorder prediction 571 592 - -
Phco6g02910 592 SMART serkin_6 285 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02910 592 FunFam PR5-like receptor kinase 360 570 - -
Phco6g02910 592 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
Phco6g02910 592 Gene3D Phosphorylase Kinase; domain 1 261 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02910 Phco-Chr6 50231762 50236414 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco6g02910 Pkinase 7.4e-47 CL0016