Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02901 ATGTTCCCTTTTGTTTTGTTGTTTTACTTTTTCCTTCTTTGCTGCAACTCTATTGCACCCTTGGTGCATTCTCTGAATGCTGAAGGCTCTGTACTTTTGACACTAAAGCAGTCGCTCGCAGACCCACAAGGGTCCATGAGTAACTGGAATTTCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAAATGTTGTGGCCATCAGCATCCCGAAGAGGAAACTCTACGGTTCTCTCCCTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTTTTTGGAGACTTGCCTGCACAGCTCTTTCAAGCTCAGGGACTGCAAAGCTTAGTGCTTTATGGCAATTCATTTTCTGGGTCTGTTTCCAGTGAGATTCAGAATCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTTAATGGGTCATTGCCTGCTGCAATTGTCCAGTGCAAGAGACTCAAGGCCCTTGTTCTCAGTCAGAACAATTTCACTGGCCCCTTACCAGATGGGTTTGGTACTGGTTTATTTTCTCTGGAAAGACTAGACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGATTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGACTTGTCTCATAATCATTTTACTGGTTCAATTCCAGCTAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTTCAACAATTTAAATGGTCCAATTCCTCAAAATGGTGCTTTGATGAACAGAGGACCAACTGCCTTTATTGGCAATCCTGGTCTATGTGGTCCTCCTCTGAAGAATTCATGCGGTTCTGATACTCCATCTGCGAGTTCACCTTCCTCGTTTCCATTTATTCCAAGTAACTACCCAGCTGAGGGTACTGGTAATGGTTCCATGGGAAGTGGGAAAAATAAAGCGCTAAGTAAGGCAGCTGTGGTTAGCATTGTTGTGGGTGATATAATTGGAATTTGCCTCTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTTGATGAAGATGGAGTTAACAAGGGAAGCAAAGGGAGGAAAGAGTGTTTCTGCTTCAGAAAGGATGAATCCGAGGCCCTGTCGGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCGTGTGACTTTTGATTTGGATGAGCTTCTGAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTTCAAACAGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATATCCAATGGAAGCCTTGATACAGCAATTCATGGGAAGGCTGGACTTCTCACATTTACACCACTTTCTTGGTCCTATCGATTGAAGATCATGAAAGGAACCGCAAGAGGGTTGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGACACGACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCTGGTGGGTCTCCAACCTTGCAATCCAACCGAGTGGCTGCGGAGAAACAACATGGAAGACAAAAGAGCATCTCCACTGAAGTCACCGCCAATGTGTTGGGGAACGGTTACATGGCTCCAGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTTTACTCATATGGTGTGATATTGTTGGAAATGATCACAGGAAAATCATCCATTGTCCAAGTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCGCTCTTGGAGGTGTTGGATCCTTACTTGGCTGAAGATGCAGATAAGGAGGAGGAGATAATTGGAGTTCTGAAGATTGCAATGGCTTGTGTTCATAGCAGCCCTGAAAAGAGACCTACGATGAGGCACGTGCTTGATGCTTTGGATAGATTGACTATTTCCTCTGATTGA 2142 0.4388 MFPFVLLFYFFLLCCNSIAPLVHSLNAEGSVLLTLKQSLADPQGSMSNWNFSDENPCSWNGITCKDQNVVAISIPKRKLYGSLPSSLGSLSQLRHVNFRNNKLFGDLPAQLFQAQGLQSLVLYGNSFSGSVSSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKALVLSQNNFTGPLPDGFGTGLFSLERLDLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFTGSIPASLGNLPEKVYIDLTFNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGSDTPSASSPSSFPFIPSNYPAEGTGNGSMGSGKNKALSKAAVVSIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDEDGVNKGSKGRKECFCFRKDESEALSDNNVEQYDLVPLDSRVTFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYISNGSLDTAIHGKAGLLTFTPLSWSYRLKIMKGTARGLVYLHEFSPKKYVHGDLKPSNILLGHDMEPHISDFGVGRLANIAGGSPTLQSNRVAAEKQHGRQKSISTEVTANVLGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGKSSIVQVGNSEMDLVQWIQFCIEEKKPLLEVLDPYLAEDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDALDRLTISSD 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02901 713 SUPERFAMILY L domain-like 27 278 - -
Phco6g02901 713 Gene3D Phosphorylase Kinase; domain 1 377 484 - -
Phco6g02901 713 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Phco6g02901 713 Gene3D Ribonuclease Inhibitor 80 285 IPR032675 -
Phco6g02901 713 ProSiteProfiles Protein kinase domain profile. 409 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02901 713 Pfam Protein kinase domain 415 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02901 713 SMART LRR_typ_2 187 211 IPR003591 -
Phco6g02901 713 SMART LRR_typ_2 90 114 IPR003591 -
Phco6g02901 713 SMART LRR_typ_2 138 162 IPR003591 -
Phco6g02901 713 CDD STKc_IRAK 415 708 - -
Phco6g02901 713 FunFam Leucine-rich repeat protein kinase family protein 485 711 - -
Phco6g02901 713 SUPERFAMILY Protein kinase-like (PK-like) 414 705 IPR011009 -
Phco6g02901 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Phco6g02901 713 Gene3D Ribonuclease Inhibitor 21 79 IPR032675 -
Phco6g02901 713 SMART serkin_6 414 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02901 713 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Phco6g02901 713 FunFam Leucine-rich repeat receptor-like protein kinase 392 484 - -
Phco6g02901 713 FunFam Leucine-rich repeat receptor-like protein kinase 25 181 - -
Phco6g02901 713 PANTHER OS05G0588300 PROTEIN 134 707 - -
Phco6g02901 713 FunFam Leucine-rich repeat receptor-like protein kinase 189 284 - -
Phco6g02901 713 Gene3D Transferase(Phosphotransferase) domain 1 485 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02901 Phco-Chr6 50157439 50159712 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco6g02901 Pkinase 1.9e-32 CL0016