Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02891 ATGATAGATGAGTCAATTCCACTGATAAATCACGTTCCTAGCTTTGCAAGAGGTTTTACCATTCTGCTAGTACATGATGTCAAATTTTCGCGTTCCTACCTATCAAGAATTCTCGAGCTATATTCTTTCAAAGTTACTGCTACAAATAATGCATCCGCTGCTGCATCCATGATTTGCCGTCAAGAAGGCATGTTCAAACTGATAATGGCTAAAGCTGATATGCCTGACATGGACATCCTTTCTTTTCTCGGTGTAATACTCGAAAAGGACATTCCTGTCATCTTCATAAATTCTGGAGTATTTGATGATGTAAATAGGAAAGCTTTAGCTACAGGATTGTGTTATTTCCTTCAGGAGCCAATCAGTCCCAATGATCTTAAATATCTATGGCAACATGTGTATCACTCAAGAGCATATTCAACCAAAAACACTCAAAATGCAGGCTCTCAGAGCATGGTGCTCCATGCAAAGGGATTACAGAATACCCAGATGAAACAGTACTTACCTTGTGAACAGTTGACAAACACCCAATGGCAGGTTCTTGGAGCAAAAAGAGGAAGAAACGATGGTGATATATGGAGCCAGCAAAAAGGAAAGAGAACCCTTTGTGACTACACAATGCCAACCACACAGTGCATGGGTCGCAAAGCATATGGAAAAAGAAACCATGATGATTATGTGGGCAAGCGAAAACAAAAGAGATATGTTGTGCTCGAAAAGTCAGATTCATTGGGACCAGCCAAGATTAACTTTAACAACCCCAATCAATATTTCAGAATGTTTGAGTCCAAAAACCGTTTGAGTGTTTGGACTCCTGAGTTGCATAAAAAATTTATTGAAGCAGTGCAAGAATTAGGAGAGAACATTGCTCGTCCAAAACAGATATTAGTTCGGATGAATGTTGGAGAGCCTTACCTCACTGTTCGCCAGGTTGCAAGTCATCTGCAGAAATACAGATTGCGGTTGAAATGTGAAGAGAACTCTCGCAATTCTAATTTGCCTAAAGTAAGAACATCATTATCCTCAAGACACAAAGCCAACTCTTCCTCATCTGAAGGGTCCACCTTTGAAACAAAAGGTCTCCCAGCACCAAAGGTTTTCTTGAATGTGAACCATAATCAAGATCAGATTCCAGTGAACAGCGTGGGAATGGAATTCACAGCTTCTTGGGATTCACACCCAATGCCAGGTGCTTCAGTGGGTTTAAACATACCGGGAACTCAGTTCTATGATTTCGTAAAAACGTTTCTGGAAGACTCTGACTGTTTTAATTTGTATAAATATGAAACCGATCCTGCTGCTGTTGATCAATGCACTGAGATGCTAAGAAAAGTTCTAGAAGGAAGGGGTTCCTCTTAA 1359 0.4032 MIDESIPLINHVPSFARGFTILLVHDVKFSRSYLSRILELYSFKVTATNNASAAASMICRQEGMFKLIMAKADMPDMDILSFLGVILEKDIPVIFINSGVFDDVNRKALATGLCYFLQEPISPNDLKYLWQHVYHSRAYSTKNTQNAGSQSMVLHAKGLQNTQMKQYLPCEQLTNTQWQVLGAKRGRNDGDIWSQQKGKRTLCDYTMPTTQCMGRKAYGKRNHDDYVGKRKQKRYVVLEKSDSLGPAKINFNNPNQYFRMFESKNRLSVWTPELHKKFIEAVQELGENIARPKQILVRMNVGEPYLTVRQVASHLQKYRLRLKCEENSRNSNLPKVRTSLSSRHKANSSSSEGSTFETKGLPAPKVFLNVNHNQDQIPVNSVGMEFTASWDSHPMPGASVGLNIPGTQFYDFVKTFLEDSDCFNLYKYETDPAAVDQCTEMLRKVLEGRGSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02891 452 Pfam Myb-like DNA-binding domain 269 319 IPR001005 -
Phco6g02891 452 Gene3D - 262 324 - -
Phco6g02891 452 MobiDBLite consensus disorder prediction 331 357 - -
Phco6g02891 452 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Phco6g02891 452 SUPERFAMILY CheY-like 18 155 IPR011006 -
Phco6g02891 452 Gene3D - 19 154 - -
Phco6g02891 452 FunFam Two-component response regulator 262 325 - -
Phco6g02891 452 SUPERFAMILY Homeodomain-like 265 323 IPR009057 -
Phco6g02891 452 PANTHER - 10 357 - -
Phco6g02891 452 MobiDBLite consensus disorder prediction 329 358 - -
Phco6g02891 452 SMART REC_2 19 130 IPR001789 GO:0000160
Phco6g02891 452 NCBIfam myb-like DNA-binding domain, SHAQKYF class 268 321 IPR006447 GO:0003677
Phco6g02891 452 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02891 Phco-Chr6 50054238 50058019 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco6g02891 Response_reg 9e-08 CL0304