Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02802 ATGAGCCTTAATTCTCAGAATCTCCATTTGTGGTGGGGACTCTCATGCTTTCTTCTTCTACTTCTTCAATCTGTTACATCTCAGTCAGTTTCATCTCTCAGCTCTGATGGGATCCTCTTGCTAAAATTCAAATACTCCATCCTCAGCGACCCTTTATCAGTCTTGAAGAACTGGAGCTACGATGATGCAACACCATGTTCATGGTATGGTGTTACATGTGACGAAATTGGAGCCCCCGGTACCCCTTATTTGTTCAGAGTAACCAGTTTGACACTTCCCAATAGCCAACTTTTGGGTTCCATCTCTGAAGACTTGGGCTTGATTCAATACCTTCGCCACATCGATCTCTCCAACAATTTCCTTAATGGCTCTCTACCCAACACTATCTTCAACTCTCCCCTGCTTCAAGTACTTTCCCTCTCAAACAATGTTATCTCGGGTGAACTACCTGAGCTGGTTGGTAAACTGACAAACCTTAAACTTCTTAATCTCTCTGACAATGCCTTTGTCGGGTTGATCCCAGAAAACCTGACTACTCTACCAAACTTAACCGTTGTTTCTCTGAAGAGTAACTACTTTTCTGGTAGTGTCCCAACCGGGTTCAAATACGTGGAGATTCTGGATCTGTCCTCCAATTTGTTCAACGGTTCTTTGCCAGAAGACTTTGGCGGCGAAAGCTTACGCTACTTGAACCTCTCTTACAACAAGATTTCGGGAACAATTCCTCCATCATTCGCGAAACATATTCCTGGAAACACAACAGTGGACCTCTCATTCAACAATCTGACAGGGCCAATACCAGAGTCTTTGGCTTTGCTCAACCAGAAGACAGAGTTTCTATCAGGAAATGCTGATCTTTGTGGTAAGCCTCTGAAGATTCTGTGCACCGTTCCCTCTACTGAGTCCATGGCTCCGCCCAACGTCACCACATCTTCACCAGCCATTGCTGCCATACCGAAAATTGACTCAAACCCTTCAACAAACACTACGGGAACCACCGCCAGTTCTCATAGTGTATCACCAAGTGGCCTAAAACCTGCCACCATAGCAGCAATTGTGGTAGGAGACTTGGCTGGCATGGCCCTTTTGGCCCTCGTCATTCTCTTCGTCTACCAACAGAAAAAGAAAAGATATTCGGATCCACATCCAAATTCAAAACGAGACATGAATGCTGCTTCTGGTAGCAACTCAGAAAAGAAAGACGAAACTGTTTCAAGAGAAGATGCAGAAGCAAGAACAGTTACTCCTTCGCTTCCTTGTTCCTGCTTAACAATCAAAGAAGAAGAAACTTCAGAAGCAACTAGCTCCGACAGTGACCACGAGAGCAACACCGCAGTGGACATCATGGCAGCACAAAACGGGAGCCTTCCGAAACAAGGCACTCTTGTAACCGTTGACGGGGAAACAAATTTGGAGCTTGAGACTCTGCTGAAGGCTTCAGCGTATATTCTGGGAAACAGCCTCGTCAGCATTGTCTACAAGGCAGTGCTAGAGGACGGGCGAGCCTTTGCTGTTAGAAGGATCGGTGAGTGTGGGATTGAGAGAAGGAAGGACTTTGAGAACCAAGTGCGTGCCATTGCAAAGCTTCGCCATCCCAATTTGGTTAAGGTTCGCGGCTTCTGCTGGGGTCGAGATGATAAACTCCTAATATGTGACTATCTCCCCAATGGCAGCCTCGCCACCACTGATCACAGAAAAGCAGGTTCGTCTCCTTTGAACTTGTCCTTGGAGATTCGGTTTAAGATAGCGAAAGGGGTGGCACGAGGTTTGGTCTTCCTTCACGAGAAGAAACACGTGCATGGCAATGTAAAACCCAGCAACATCCTGCTAAACTCAGAAATGGAAGCCATCATAAGCGATTTTGGGCTGGACCGGCTCCTCCTGAACGATGTGACCCACAGAGGAAACGGTTCGGGTAGACAATTAATGGCGAGCCAAAGAAGCCAGCAAGAGGTGGCATTTGGTTCAAGTCCCTTCGCAGCAATGGGATCATCGTCGAGTGGTGCGGGCCACATAATGCCCTATCAAGCCCCAGAGGCAGTTGAGAACATAAAACCCAGTCAGAAATGGGACGTGTACTCCTTTGGAATGGTGTTGCTGGAGCTTCTAACAGGGAGGGTTTTCCAGGAGCGGGAGTTGGAGCAGTGGAATGAACCGGGTTTGGTGGAGGAGGAAAAAAACCGGGTGTTGAGAATGGTTGACGTAGCAGTAAAATCTGAAATAGAAGGGAGGGAGAATGTGGCAGTGGCATGGTTCAAGTTGGGGCTTAGCTGTGTTTCTCATGCCCCACAAAAGAGACCCTCTATGAAAGAGGCACTACAAATCTTAGACAAGATCCCTGCTCCTGCTCCTGTTCCTGCTCCACTCAATTAA 2373 0.4724 MSLNSQNLHLWWGLSCFLLLLLQSVTSQSVSSLSSDGILLLKFKYSILSDPLSVLKNWSYDDATPCSWYGVTCDEIGAPGTPYLFRVTSLTLPNSQLLGSISEDLGLIQYLRHIDLSNNFLNGSLPNTIFNSPLLQVLSLSNNVISGELPELVGKLTNLKLLNLSDNAFVGLIPENLTTLPNLTVVSLKSNYFSGSVPTGFKYVEILDLSSNLFNGSLPEDFGGESLRYLNLSYNKISGTIPPSFAKHIPGNTTVDLSFNNLTGPIPESLALLNQKTEFLSGNADLCGKPLKILCTVPSTESMAPPNVTTSSPAIAAIPKIDSNPSTNTTGTTASSHSVSPSGLKPATIAAIVVGDLAGMALLALVILFVYQQKKKRYSDPHPNSKRDMNAASGSNSEKKDETVSREDAEARTVTPSLPCSCLTIKEEETSEATSSDSDHESNTAVDIMAAQNGSLPKQGTLVTVDGETNLELETLLKASAYILGNSLVSIVYKAVLEDGRAFAVRRIGECGIERRKDFENQVRAIAKLRHPNLVKVRGFCWGRDDKLLICDYLPNGSLATTDHRKAGSSPLNLSLEIRFKIAKGVARGLVFLHEKKHVHGNVKPSNILLNSEMEAIISDFGLDRLLLNDVTHRGNGSGRQLMASQRSQQEVAFGSSPFAAMGSSSSGAGHIMPYQAPEAVENIKPSQKWDVYSFGMVLLELLTGRVFQERELEQWNEPGLVEEEKNRVLRMVDVAVKSEIEGRENVAVAWFKLGLSCVSHAPQKRPSMKEALQILDKIPAPAPVPAPLN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02802 790 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Phco6g02802 790 MobiDBLite consensus disorder prediction 302 342 - -
Phco6g02802 790 Gene3D Ribonuclease Inhibitor 34 202 IPR032675 -
Phco6g02802 790 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 778 - -
Phco6g02802 790 ProSiteProfiles Protein kinase domain profile. 478 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02802 790 Gene3D Phosphorylase Kinase; domain 1 457 553 - -
Phco6g02802 790 FunFam Leucine-rich repeat receptor-like protein kinase 203 297 - -
Phco6g02802 790 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Phco6g02802 790 FunFam Leucine-rich repeat receptor-like protein kinase 33 199 - -
Phco6g02802 790 MobiDBLite consensus disorder prediction 393 409 - -
Phco6g02802 790 Pfam Protein kinase domain 484 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02802 790 Pfam Leucine Rich Repeat 111 129 IPR001611 GO:0005515
Phco6g02802 790 Pfam Leucine Rich Repeat 226 246 IPR001611 GO:0005515
Phco6g02802 790 Gene3D Ribonuclease Inhibitor 203 297 IPR032675 -
Phco6g02802 790 SUPERFAMILY Protein kinase-like (PK-like) 483 784 IPR011009 -
Phco6g02802 790 MobiDBLite consensus disorder prediction 377 415 - -
Phco6g02802 790 CDD TM_EGFR-like 348 377 - -
Phco6g02802 790 SUPERFAMILY L domain-like 37 293 - -
Phco6g02802 790 Gene3D Transferase(Phosphotransferase) domain 1 554 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02802 Phco-Chr6 49282035 49284632 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco6g02802 Pkinase 5.5e-29 CL0016