Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02788 ATGGAAATAGAAGGTCAAGGAAAGAGAGCTCTCGAGCTTTCCTTCTTGAAGAGTAGTATCCAGAATAATCTTGAAGAAGTGGATCTCAGAGGGAGGAAAAAGAATTCCTGGGCGATTGGAAGGAACTCTCACGAAACTCAACTCTCTCTTTCTCTCTCTCCCTCACCCTCTTCCCTTTGCACCCAATCCCCATTTCAGATCGAACCCTTCTTCTTCCTCCACCTTTTCCCATTCGCTGCGGTGACTGCTCTCTCATCGTCACCACCAAGATTACTTGACTCACATTTAGATTATAGTGGTGGATGCTGCGGTGTGCGTTTTTTCCTCAGAACTATGACTAGTCCAATTGGAGAATTGACAAGCAGTAACAACAGTACCGCCGGAGGGATGAGTACTGAACAATCTGAATTGTCTGAAAAAACACAGTTAGGGACTGAGCATTTACTAAAGGAACAAAGGGAGTCCGGTACTGTGTTAACCAGTTCAGTTATGGATGAAAAATCCAATCAAGTTTCTGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATGGCTTAGAAATGAATTGTCAGACTGTTGAAGGTTCACACCTTCAACAAAGTACCGATAAACAAGTTTCTTTACAGTTATCTAACGATGAGCCAGAAAACCCATCCCAACCATTGTCTGAAAATGAACCTGTGGAATCCGCACCTGCCTTTGCTGGGGATGGCCAAAAGCAACCAAGTCCAGCTCTAGCGAATACAAGTGATGTGAATAATATGTTGGATCCACCTTCTGGAGATGTTGTGACCAATTGTTCAGAAAAAGTGTCTAATAGCCCTGCTAATTCGCAATTGAGACGCAAGGGTAAAAAAAACTCAAAATTGTTGAAGAAAACATATATGCTACGATCAATAGGAAGCAGTGACAGAGCTTTGCGGTCCAAAACAAAAGAAAATCCCAAGACATCTGAACCAAATAGTAATCTGGTCGATTGTAATAATAATAATAATAATGATGGAGTCAAGAAGAAAAGTGGTAGGAAGAAGAGAAAGAGTGGAGAGGTTGGAATTACTGATCAATTCTCCAGAATCAAATCTCACTTAAGATATTTATTAAACAGAATAGGCTACGAGAAAAGCTTGATTGATGCTTATTCTGCTGAGGGCTGGAAAGGATACAGTATGGAAAAATTGAAGCCTGAGAAAGAGCTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAATTGAACATCAGGGATCTTTTTCGAAATTTGGATTCATTGTGTACTGAAGGAAAGCTACCAGAGTCTTTATTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCACTCCAAAGAGTTGAGCTCTAATAATGATATAATTCTCTGTGATGGTGTCTGTGACCGTGGCTTTCACCAGCTCTGTTTGGATCCTCCGTTGTTAAATGAAGAGATTCCACCTGGTGATGAGGGCTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATGGACCTTATTAATGACTCCTTTGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCAGCTGCTGCTGGAAATAATATGGATAACAACTTGGGACTCCCTTTTGATGATTCTGACGATGATGATTATAATCCTGATGGTCCAGAGGATGTGAAAGTTGAAGGAGACGAATCAAGTTCTGATGAATCTGACTATGCTTCCGCTTCTGAGAATTTGGAGGGTTCACATGGGGATCAATACTTAGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGACCCTGGTGCTCCAGATGCTGATTGTAAAGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATTCATCTGCTGCAATTGTGGAGAATACCTCCCTTGGACAGGATAGTGAAATCAGATCTGCATCATTGGATGATGTTAAGTACTTGAACAGTTATGGCAAAAGAAAGGGTAAAGCTGGTAAAAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGTCAAGAAGGTTCTACACCTATTTCTGGGAGAAGGAATTTGGAAAGGTTGGACTACAAAAAACTGTATGATGAGACATACCACAGCGATCCTAGTGAGGATGAAGATTGGACAGCCACTGTTACTCCAAGTAGAAAGAAGAAAGACAGCGATACTAGTGAGGATGAAGATTGGACAGCCACTGTTACTCCAAGTAGAAAGAAGAAAGGCAATGCGATTCCAGTGTCACCAGATGGAAATGCTTCAAATAATTCCATGCACACTCCTAAGAGGAATGGCCATCAGAATAAATTTGAAAATACAAAAAATTCACCTGCTAAATCACTTGATGGCCATGTGAAATCTGATTCCAGGAAACAAAAGTCTAGATCTTCAGCATACAAAAGACTAGGAGAAGCTGTAGTTCAGAGACTTCTCATATCTTTTAAAGAAAATCAGTATCCAGATAGAGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTGTCAGCAGGTTGCCAAATGGTTTGATAATACACGATGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCAGGTAGAAATACATTACAGCAAGCTACTGATAGTAGAGCTGAAAATGAGGGGGCTGAATGTGAAATAATGTCCCCGGAGGTCAGTGGAGAAATATCAAAAGCCCCAAGCTCTGGAAAAAGAAAGCATTTGTCAGAACACCAACTATCTGAAACACAGCTGGATATCAATGGCTCGGCAACAAGTTCACCAAATGCTCATCAAACCCAAATGGGCAAGAAAATGAAGACAAGGAGAAGGAAATGA 2877 0.4133 MEIEGQGKRALELSFLKSSIQNNLEEVDLRGRKKNSWAIGRNSHETQLSLSLSPSPSSLCTQSPFQIEPFFFLHLFPFAAVTALSSSPPRLLDSHLDYSGGCCGVRFFLRTMTSPIGELTSSNNSTAGGMSTEQSELSEKTQLGTEHLLKEQRESGTVLTSSVMDEKSNQVSANATENSVILLPAPPQHGLEMNCQTVEGSHLQQSTDKQVSLQLSNDEPENPSQPLSENEPVESAPAFAGDGQKQPSPALANTSDVNNMLDPPSGDVVTNCSEKVSNSPANSQLRRKGKKNSKLLKKTYMLRSIGSSDRALRSKTKENPKTSEPNSNLVDCNNNNNNDGVKKKSGRKKRKSGEVGITDQFSRIKSHLRYLLNRIGYEKSLIDAYSAEGWKGYSMEKLKPEKELQRAKSEILRRKLNIRDLFRNLDSLCTEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQLCLDPPLLNEEIPPGDEGWLCPGCDCKDDCMDLINDSFGTSLSISDTWERVFPEAAAAAGNNMDNNLGLPFDDSDDDDYNPDGPEDVKVEGDESSSDESDYASASENLEGSHGDQYLGLPSEDSDDGDYDPGAPDADCKVNEESSSSDFTSDSEDSSAAIVENTSLGQDSEIRSASLDDVKYLNSYGKRKGKAGKKLSMADELSSLLEPDSGQEGSTPISGRRNLERLDYKKLYDETYHSDPSEDEDWTATVTPSRKKKDSDTSEDEDWTATVTPSRKKKGNAIPVSPDGNASNNSMHTPKRNGHQNKFENTKNSPAKSLDGHVKSDSRKQKSRSSAYKRLGEAVVQRLLISFKENQYPDRATKESLAQELGLTCQQVAKWFDNTRWSFRHSSQMETNSGRNTLQQATDSRAENEGAECEIMSPEVSGEISKAPSSGKRKHLSEHQLSETQLDINGSATSSPNAHQTQMGKKMKTRRRK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02788 958 MobiDBLite consensus disorder prediction 199 354 - -
Phco6g02788 958 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 210 943 - -
Phco6g02788 958 Pfam PHD-finger 451 506 IPR019787 -
Phco6g02788 958 ProSiteProfiles Zinc finger PHD-type profile. 449 506 IPR019787 -
Phco6g02788 958 MobiDBLite consensus disorder prediction 199 231 - -
Phco6g02788 958 ProSitePatterns Zinc finger PHD-type signature. 452 503 IPR019786 -
Phco6g02788 958 CDD homeodomain 825 872 IPR001356 GO:0003677
Phco6g02788 958 MobiDBLite consensus disorder prediction 321 340 - -
Phco6g02788 958 FunFam Homeobox protein HAT3.1 432 510 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 540 651 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 766 781 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 872 958 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 622 651 - -
Phco6g02788 958 ProSiteProfiles 'Homeobox' domain profile. 811 871 IPR001356 GO:0003677
Phco6g02788 958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 508 IPR013083 -
Phco6g02788 958 MobiDBLite consensus disorder prediction 247 286 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 683 703 - -
Phco6g02788 958 SUPERFAMILY Homeodomain-like 810 874 IPR009057 -
Phco6g02788 958 Gene3D - 806 879 - -
Phco6g02788 958 Pfam Homeodomain 824 867 IPR001356 GO:0003677
Phco6g02788 958 SMART HOX_1 809 875 IPR001356 GO:0003677
Phco6g02788 958 MobiDBLite consensus disorder prediction 715 818 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 799 816 - -
Phco6g02788 958 SUPERFAMILY FYVE/PHD zinc finger 441 509 IPR011011 -
Phco6g02788 958 MobiDBLite consensus disorder prediction 872 891 - -
Phco6g02788 958 SMART PHD_3 451 504 IPR001965 -
Phco6g02788 958 FunFam Homeobox protein HAT3.1 813 882 - -
Phco6g02788 958 MobiDBLite consensus disorder prediction 715 753 - -
Phco6g02788 958 CDD PHD_PRHA_like 451 503 IPR045876 -
Phco6g02788 958 MobiDBLite consensus disorder prediction 927 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02788 Phco-Chr6 49187571 49199437 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Phco6g02788 PHD 2.1e-10 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02788 6 49187571 49199437 Phco6g02788 6 49187571 49199437 ECH