Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02771 ATGGGTGATGCACTAAATGAAGTGCAGCACAGGGGTGGTGTACCTGCTACTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGAATTGAATTTGAATCCCATGAAGCAGCGTATTTATTTTATCAGGAATATGCTAAATCTATGGGATTTACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGTTCTAGGTATGGTGTTACGCCTGAGACTGACAGTGGGAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCACGTGAAGAGGAAGGCAGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATTTTGCATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAGAACATTGGGTCCTTCTTAAGCGATATAAACTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGAAGAAGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCATGTACAAAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAGCAGCGCTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCTCAGCTTTAATGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCGTTTGCACCTTTTGTTGGAGTGAACCACCACTCTCAACCTATATTGCTTGGATGTGCATTGGTTGCAGATGAGACTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAGGTTATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAATTGAAGAAGTATTTCCGAATGTACGTCATTGTTTTTCTCTTTGCCACATACTAGAGAGGATACCAGAAAATCTCTCTTTTGTGATCAAACAGCACAACAACTTCTTACCAAAATTTAACAAGTGCATTTTTAAATCATGGACAGATGAACAGTTTGACATGAGATGGTGGAAAATGGTCGGTATATGTGAACTCCAAGATGATATATGGTTTCAGTCATTGTATGAGGACCGCAAAAAGTGGGTACCAACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAACGCTCTGAAAGTACGAGCTCTTTCTTTGACAAATATATTCATAAGAAAATTACCCTTAAAGAGTTTGTTAAACAATATGGGGCAATTCTTCAGAATAGGTATGATGAGGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACTGTTTATACACATGCAATATTTAAGAAATTTCAAGTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGGATAGAGGTTGGAGATGGAACGGTTGCAAAGTTCATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAAATGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCTTTGAGTGTTCTCCAACGTTGTGGTTGTTCGAGTGTTCCATCTCATTATATCTTGAAGAGGTGGATGAAAGATGCCAAAATTAAGGAATCAATGGCAGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGTTATAATGACTTGTGTAAACAAGCTATCGATTTGAGTGAAGAAGGATCATTATCTGAAGAGAATTACAGTGTTGTTTTTCGTGCGCTTGTTGATGCCTTGAAGAATTGTGTACTCGTGAATAATTCTAATAACAGCGGTGCAGAAACTAGCAATAATGCTTATGGCCTTCGTGAAGCAGAAGAAAATCAGGGTCCTCTCGCTTTGAAACCAAATAAAAGGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGCTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCTCCACATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGCACACAGCAAAGCATTCATGGGCTGGGAGGGCAACTGGAATTTCGTCCAGCACCTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACGGTTCAAGAAATACTTAG 2430 0.3947 MGDALNEVQHRGGVPATSPKRDIALFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPETDSGSSRRPSVKKTDCKACMHVKRKADGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSFLSDINYQFDRGQYLALEEGDAQIMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAIEEVFPNVRHCFSLCHILERIPENLSFVIKQHNNFLPKFNKCIFKSWTDEQFDMRWWKMVGICELQDDIWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESTSSFFDKYIHKKITLKEFVKQYGAILQNRYDEEAIADFESLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEVGDGTVAKFIVQDYEKDEEFLVTWNEMSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWMKDAKIKESMADRTRRIQTRVQRYNDLCKQAIDLSEEGSLSEENYSVVFRALVDALKNCVLVNNSNNSGAETSNNAYGLREAEENQGPLALKPNKRRNAARKRKAQLEQDVILANAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQSIHGLGGQLEFRPAPTFGYSLQDEPDPQFHGNGSRNT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02771 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 644 IPR031052 GO:0006355
Phco6g02771 809 MobiDBLite consensus disorder prediction 1 20 - -
Phco6g02771 809 MobiDBLite consensus disorder prediction 789 809 - -
Phco6g02771 809 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Phco6g02771 809 Coils Coil 681 701 - -
Phco6g02771 809 Pfam MULE transposase domain 255 348 IPR018289 -
Phco6g02771 809 Pfam SWIM zinc finger 545 570 IPR007527 GO:0008270
Phco6g02771 809 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Phco6g02771 809 SMART 26again6 546 573 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02771 Phco-Chr6 49067048 49070131 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco6g02771 MULE 2.7e-25 CL0219