Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02754 ATGGAATCTTCTCAACAGATTTCTCAAGAATGGGGATCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTGGAGAAAAGCACTATGGAAATACCACTTTAGGCTTTTGGCCTGGCCATGAATCCACAACAGTGACCATTAAAGGCACTGATAGCAACTCATACTTCCTTTCAAATGTTACAGACATTAATTTATGTTTTTTACAAGGGAGTAGCTGCAGCATTGATACTGGTAATAGTATCTTTTCCACTACAAGTAGTGCACCCTACTCCTTTGATCCAGCAACAAACTTTGACTCTGTGTCCATGGCTTTTTGCCTGGGAGATGCCCAATTTAGTCCACATAGTTTTCAGTGTAATGACAACTCAAGCCAACAGATAAATGAAAACACTGATGAAGAGTCAAGTCTAGACCCAGTAGCTCTTGCTGACAACAATTTGCAGGCTAAGAGGGAGTATGAGATGATGGTTTCTGAACATGTACAAGAGGTCAGAAGTGGAAACCTGGAGAACCTAACAAAAAGACTTAGGAGCTCAAAAGAGGTCTCAAAAACATTAAGGAACGCTAAGTTGAAGAAAATTTCAAAATCTGCTTCAATGAACAAGAATGAAGATGAAAGAAGCTTGAACCTCCAAGGGCTTGGTTGTTTTTCACAGGGTGACTCTAGTGCTTCTCTGAAGCCAAATGGAGGAGCATCGAAAGATCCTGCACCTCCCAATTTGCTTCGAAAATCAAGAGCAAGTAATGGTCCTGCCACTGATCCACAGAGCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGTCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGATGAAGCAGTGCAATACGTTAAGTTTTTACAGCTCCAAATTAAGCTTCTAAGCTCTGACGATATGTGGATGTATGCCCCAATAGCTTACAATGGTATAAACATTGGCCTTGACCTCAGTATTTGTCCAACCAAAGGAAGATGA 1032 0.4089 MESSQQISQEWGSLCGLHTTEEADFMAQLFGEKHYGNTTLGFWPGHESTTVTIKGTDSNSYFLSNVTDINLCFLQGSSCSIDTGNSIFSTTSSAPYSFDPATNFDSVSMAFCLGDAQFSPHSFQCNDNSSQQINENTDEESSLDPVALADNNLQAKREYEMMVSEHVQEVRSGNLENLTKRLRSSKEVSKTLRNAKLKKISKSASMNKNEDERSLNLQGLGCFSQGDSSASLKPNGGASKDPAPPNLLRKSRASNGPATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLSICPTKGR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02754 343 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 117 315 IPR045843 GO:0003700|GO:0006355
Phco6g02754 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Phco6g02754 343 SMART finulus 263 312 IPR011598 GO:0046983
Phco6g02754 343 Gene3D - 261 315 IPR036638 GO:0046983
Phco6g02754 343 MobiDBLite consensus disorder prediction 125 144 - -
Phco6g02754 343 Coils Coil 175 195 - -
Phco6g02754 343 MobiDBLite consensus disorder prediction 125 141 - -
Phco6g02754 343 MobiDBLite consensus disorder prediction 226 268 - -
Phco6g02754 343 FunFam Basic helix-loop-helix transcription factor 258 315 - -
Phco6g02754 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 323 IPR036638 GO:0046983
Phco6g02754 343 Pfam Helix-loop-helix DNA-binding domain 267 307 IPR011598 GO:0046983
Phco6g02754 343 CDD bHLH_AtIND_like 258 320 - -
Phco6g02754 343 MobiDBLite consensus disorder prediction 181 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02754 Phco-Chr6 48955293 48957080 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g02754 HLH 2.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00031 4 220651 222576 Phco6g02754 6 48955293 48957080 PCT