Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02753 ATGGATCCGACTGACCAACTTTCTGAAGAATGGAGCTCTCTTAGTGGCTTTTGCACAGCTGAGGAAGCTGACTTCATGAGCCAGTTGCTGGGCAACTGCTCACTCCCTGAAAATCTCAGTGGAAATTTCCACTTGGGAATTCCATCTGCGACATGGCCTGGCCATGAATCAACAATAGTGACCGTGACAAGCATCAATGAAAGTCCATATTTTCCTACTACCGCTGATAATAGTAATAGTAGTTATTTATGTTTTTCACAAGGAAGTAGCTCCACTTCTGATAGTAGCAATATATTTCCTACTACAAGTGGCAATAAACACTGCTTGAATGACCCAGTAGCCAACATTGGCTACATGTCCATGGGTTTTGCCAAGTTCAGCCCATATAATGTTCAAGGGAGTGACAACCAACAGATGAATGAAAACACTGATCAAGATTTAGGTCTAGAGGTTATTGCTGACAAGAATTCGCTGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAAAGGAGGATATAACCACCAATCTGGAGAAGTTGGGAAAAAGATCTAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGCTAAATCTGTGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGCAGAAGTCCTGATCTTCAGGGTTGCTGCTCAGAGGATGATGACTCCAATGCTTCTCAGGAGCTAAATGGAGGAGGACCTTCAAGTTTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCCAACGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAACTCCAAATTAAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAGCCATAA 1059 0.4193 MDPTDQLSEEWSSLSGFCTAEEADFMSQLLGNCSLPENLSGNFHLGIPSATWPGHESTIVTVTSINESPYFPTTADNSNSSYLCFSQGSSSTSDSSNIFPTTSGNKHCLNDPVANIGYMSMGFAKFSPYNVQGSDNQQMNENTDQDLGLEVIADKNSLDHQECEVLVSEAAKEDITTNLEKLGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLQGCCSEDDDSNASQELNGGGPSSLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02753 352 Gene3D - 266 323 IPR036638 GO:0046983
Phco6g02753 352 MobiDBLite consensus disorder prediction 178 278 - -
Phco6g02753 352 CDD bHLH_AtIND_like 267 329 - -
Phco6g02753 352 FunFam Basic helix-loop-helix transcription factor 267 324 - -
Phco6g02753 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Phco6g02753 352 SMART finulus 272 321 IPR011598 GO:0046983
Phco6g02753 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Phco6g02753 352 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 91 324 IPR045843 GO:0003700|GO:0006355
Phco6g02753 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Phco6g02753 352 MobiDBLite consensus disorder prediction 214 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02753 Phco-Chr6 48951201 48952749 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g02753 HLH 2.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02753 6 48951201 48952749 Phco6g02753 6 48951201 48952749 ECH