Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02740 ATGGCCAGTTTTGGGGGAACCACACAAAAGTGCATGGCTTGTGACAAAACGGTGTATCTTGTTGATAAGCTAACTGCTGATGGCCGTGTCTATCACAAGGCCTGCTTCAGATGCCACCATTGCCGCAACACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTTCTATACTGCAGACCTCATTATGATCAACTCTACAAGCGAACTGGCAGCTTGGACAAAAGCTTCGAAGGAACACCCAAAGTTCAGAAACCAGAGAAATCGATCATTGAAAATGAGAACTCTAAGGGCCTCGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGTGCTGCAAAAAGACAGTGTATCCCACTGAGCGGGTAACGATTAATGGAACACCCTACCATAAGAGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTATTACACACGAGGGAAAGCTGTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAGGGTAATTACAGTCAGCTGGAGAATGACCAAGTTCCTACCACAGAAGTCTCTGCTTGA 564 0.4504 MASFGGTTQKCMACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKSIIENENSKGLANVFLGTRDKCVCCKKTVYPTERVTINGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVPTTEVSA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02740 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Phco6g02740 187 CDD LIM1_SF3 7 69 - -
Phco6g02740 187 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Phco6g02740 187 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Phco6g02740 187 FunFam LIM domain and actin-binding 1 5 75 - -
Phco6g02740 187 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Phco6g02740 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Phco6g02740 187 PANTHER OS06G0237300 PROTEIN 2 87 - -
Phco6g02740 187 Gene3D Cysteine Rich Protein 6 75 - -
Phco6g02740 187 Gene3D Cysteine Rich Protein 105 174 - -
Phco6g02740 187 Pfam LIM domain 11 65 IPR001781 -
Phco6g02740 187 Pfam LIM domain 110 165 IPR001781 -
Phco6g02740 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Phco6g02740 187 FunFam LIM domain and actin-binding 1 104 174 - -
Phco6g02740 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Phco6g02740 187 SMART lim_4 109 161 IPR001781 -
Phco6g02740 187 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02740 Phco-Chr6 48859107 48860676 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phco6g02740 LIM 5.6e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02740 6 48859107 48860676 Phco6g02740 6 48859107 48860676 ECH