Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02719 ATGATACCCACGGCCATGGATTCAATAGCAAAGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGCCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGTGGAGCCCATGTGGCGCTGGTGGTGTTCTCGCCCGGTGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGACGCCGTCATCGACCGATTTCTGGGGCGGGCCCCGGTGCAGGACTCCGGCACCATGCAGTTCATTGACGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAATGAACTTCTAGAAACGGAGAGGAAGCGCGGCGAGGAGCTGAGCCGGTTGAGGAAGGAGGCGCAGGAACTGATGTGGTGGACCCGCCCCACTGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGGCAGCATTGGAGGAGCTGAAGAAGCACGTTGCTCAACTTGCTGAGAGGGCTATGCTTCAGAGTGCTGTTAACCAGGGTCATCAGTTTTTCCCTGGGGCTTCTTCCTCTGCCAATTTCGTGCCTCAGTCTCAGCCTCAGCTTCAGCCACAGCCTCCTCAAGTGTACACTGCACAGACCATTCCTACTATCCTTCAGAACTATATGTTCCCTGATGTAACCATCATGCAGCAACAGCATCACGGGTTCGATAACATGGGGATGGGAGGATATGGACCTGGACCTGCTCCTGCTGGTGGATTTTTCTGA 780 0.5526 MIPTAMDSIAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRLRKEAQELMWWTRPTEELSVEQMEQYKAALEELKKHVAQLAERAMLQSAVNQGHQFFPGASSSANFVPQSQPQLQPQPPQVYTAQTIPTILQNYMFPDVTIMQQQHHGFDNMGMGGYGPGPAPAGGFF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02719 259 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 SUPERFAMILY SRF-like 15 88 IPR036879 GO:0003677|GO:0046983
Phco6g02719 259 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
Phco6g02719 259 Gene3D - 94 186 - -
Phco6g02719 259 FunFam Agamous-like MADS-box protein AGL62 26 92 - -
Phco6g02719 259 Coils Coil 102 139 - -
Phco6g02719 259 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Phco6g02719 259 PANTHER MADS BOX PROTEIN 16 171 - -
Phco6g02719 259 Coils Coil 147 174 - -
Phco6g02719 259 Gene3D - 26 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02719 Phco-Chr6 48700528 48701307 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco6g02719 SRF-TF 2.6e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02719 6 48700528 48701307 Phco6g02719 6 48700528 48701307 ECH