Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02718 ATGGGCCGAGCCCATTGCGGTGTGCAAGTAGGCCGGTTCCCCAAAGGTCACGTTGAAAGGAGCATGTCGAAGATTAAAAAGTCTAGCTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCTAAGAAGAGTCATTTGCAAGTTACATTCTCTAAACGTCGTTCAGGAGTGTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGTGGAGTAGAGATCGCAATCGTGGTTTTCTCTCCTGCTGATAAGGCTTTCTCTTTTGGGCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACACGGAACCCTCCACAAGACTCCAGTGCGCACCACCTCGTTGAGGCTCATCGAAATGCGAATGTTCGTGATCTCAACATGCAACTCACTCAGGTTTTTAACCTTTTGGAGGTTGAAAAGAAGCGAGGGGATGATCTGGACCATGTGAGCAAAGCTAGGCAGAGGCAGTTTTGGTGGGAGGGCCCTGTTGATGAGCTTGGATTGCATGAGCTGCTCCAGTTAAAGGCCTCCATTGAAGAGCTCAAGAAGAACATAGAAAAACATGCCAGCAAATTCATGATTGACCACTCTACTGCTATATCTTCTTCTTCTTCAATTCTTGGACCTAATCATGGATTTGGTGCACTTGAACGGTATGATGCCTTTGATAACAAACCTGATGTCGGGATTGCCATTGCTTCATCACTTCCTAATGCCCATTATCTCTCCTTTCGAACTGGGTATCTTTGA 747 0.4618 MGRAHCGVQVGRFPKGHVERSMSKIKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQDSSAHHLVEAHRNANVRDLNMQLTQVFNLLEVEKKRGDDLDHVSKARQRQFWWEGPVDELGLHELLQLKASIEELKKNIEKHASKFMIDHSTAISSSSSILGPNHGFGALERYDAFDNKPDVGIAIASSLPNAHYLSFRTGYL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02718 248 CDD MADS_MEF2_like 31 98 IPR033896 GO:0000977|GO:0045944
Phco6g02718 248 Coils Coil 170 190 - -
Phco6g02718 248 Gene3D - 110 202 - -
Phco6g02718 248 PANTHER MADS BOX PROTEIN 32 187 - -
Phco6g02718 248 SUPERFAMILY SRF-like 31 110 IPR036879 GO:0003677|GO:0046983
Phco6g02718 248 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Phco6g02718 248 Gene3D - 42 109 IPR036879 GO:0003677|GO:0046983
Phco6g02718 248 FunFam Agamous-like MADS-box protein AGL62 42 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02718 Phco-Chr6 48690147 48694662 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco6g02718 SRF-TF 3.9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02718 6 48690147 48694662 Phco6g02718 6 48690147 48694662 ECH