Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02712 ATGACTGCAATTTTCTTTCTCTTTTGTCTCTGTGCCATCGTAATCATATCGCAAGGCAGTGCTCAGACACCATCCTGTGGTAACAGCAACGGCAACTACACAGTCAACAGCACGTACTACAACAACCTCAACACTCTATTATCCAGTTTCTCTACCCACGACCAAATCAACTACGGTTTCTACAATTTCTCACATGGCCAAGGCACAGACAAAGCATACGCCACAGGGGTCTGTAGAGGCGACCGTACACGGGATGAATGCCTCAAATGCCTCAACGATTCCAGAGCGTCTCTCTCAAAGGACTGTCCAAACCAGAAAGAGGCAATTGTGTGGAGTGGTGAATGCACCTTGCGCTACTCTAACCGCTCCATATTTGGCCTCATGGAGAATCAACCTACGGTGGAACTCTTGTACACGTTGGAAGTAAGGGGTTCGGTGGAGCAATTCAACGCAGCGCTTCAAAGCTTGATGAGGAATCTAACAAGCACAGCTGCGTCTGGTGACTCTCGTCGTAAGTATGCTACAGGCAGTGCACCTGCTCCAGATTTTCAAACCATATACGGTTACACGCAGTGCACTCCTGATTTGTCATCCGAAGATTGCTCTAAGTGTCTGAATGAAGCTATCTCAAAAATCCCCGAGTGCTGTAGTGGCAAGGCTGGAGGCAATGTTTTGAAGCCCAGTTGTAGAATTAGATTTGACCCTTACATCTTCTATGGACCTACACTCAAGTTGGATCCAGATGCACCACCACCCTCTCGCTTCATCAACAACACTTCTTTAGATTCGCAAGGAAAGAGCAACACGTCACGAACTATCATCGCCATAGCAGTCCCAGTTGCCAGTGCTGTTTTAGCGCTCAGTCTTTTCTGCATATATCTGACAGTGAGGACGTCAAGAAAAAAAATTGAAATTACAAGCGAAAAAGATAGTGATGATGAAGATGAAGTTACATTTGCCGAGTCATTGCAATTCAATTTTGAAACCATCCGAGTTGCTACAAATGAATTTGCCGATTCTAATAAAGTTGGACAAGGCGGGTTTGGAGCTGTCTACAGAGGACGGCTTTCCAATGGACAAACAATTGCTGTCAAAAGGTTGTCAAGTGATTCTGGGCAAGGAGATACGGAATTCAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACACCGAAATTTAGTTAGGCTAATTGGTTTCTGCTTGGAAAGAAGAGAAAGGCTGCTTATCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATAAAGAAAACACAGTTGGATTGGCAAATGCGCTACCAAACCATTAGAGGTATTGCAAGAGGCATTCTCTATCTCCACGAGGATTCTCAATTGCGAATTATTCATCGAGATCTTAAAGCAAGCAACATTCTCTTGGATGAAAACATGTATCCTAAGATATCAGATTTTGGGATGGCAAGATTGGTTCAAGTGGATCAGACTCAAGCAAATACACATAGAGTTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATATATGGTCAGTTTTCAACAAAATCAGATGTTTTTAGTTATGGTGTACTCGTTCTTGAGATTGTAAGTGGCAGAAAAAGCATTGGTTCTCGTCAAGGGGAGGATCTATTGAGCATTACATGGCGAAACTGGAAGGATGGAACAATTGCAAATATTGTAGACCCCACATTAATCAACGGTTCCCAAAATGAAATAATGAGGTGCATCCACATTGGGTTACTATGTGTTCAAGAAAACATGGATGCCAGACCAACCATGACTAGTGTTATGCTCATGCTTAACAGCTATTCTCTCACTCTCCCCGTACCTTCAGAACCTGCATTTGTTGTGGACAGTAGCACAAGAAGCTTTCCAAACATGTTGTCATTGGAACATAATTCAAGGGAAACAGGATCGACTGAATCCACAAACCAATCAACTCAATATTCGGTGGATGAGGCTTCAATTACTGAGACATATCCTCGTTAG 2001 0.4273 MTAIFFLFCLCAIVIISQGSAQTPSCGNSNGNYTVNSTYYNNLNTLLSSFSTHDQINYGFYNFSHGQGTDKAYATGVCRGDRTRDECLKCLNDSRASLSKDCPNQKEAIVWSGECTLRYSNRSIFGLMENQPTVELLYTLEVRGSVEQFNAALQSLMRNLTSTAASGDSRRKYATGSAPAPDFQTIYGYTQCTPDLSSEDCSKCLNEAISKIPECCSGKAGGNVLKPSCRIRFDPYIFYGPTLKLDPDAPPPSRFINNTSLDSQGKSNTSRTIIAIAVPVASAVLALSLFCIYLTVRTSRKKIEITSEKDSDDEDEVTFAESLQFNFETIRVATNEFADSNKVGQGGFGAVYRGRLSNGQTIAVKRLSSDSGQGDTEFKNEVLLLAKLQHRNLVRLIGFCLERRERLLIYEFVPNKSLDYFIFDPIKKTQLDWQMRYQTIRGIARGILYLHEDSQLRIIHRDLKASNILLDENMYPKISDFGMARLVQVDQTQANTHRVVGTYGYMAPEYAIYGQFSTKSDVFSYGVLVLEIVSGRKSIGSRQGEDLLSITWRNWKDGTIANIVDPTLINGSQNEIMRCIHIGLLCVQENMDARPTMTSVMLMLNSYSLTLPVPSEPAFVVDSSTRSFPNMLSLEHNSRETGSTESTNQSTQYSVDEASITETYPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02712 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Phco6g02712 666 CDD STKc_IRAK 343 605 - -
Phco6g02712 666 ProSiteProfiles Protein kinase domain profile. 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02712 666 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02712 666 SUPERFAMILY Protein kinase-like (PK-like) 323 633 IPR011009 -
Phco6g02712 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 664 - -
Phco6g02712 666 FunFam Cysteine-rich receptor-like protein kinase 10 298 412 - -
Phco6g02712 666 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Phco6g02712 666 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Phco6g02712 666 Pfam Salt stress response/antifungal 147 234 IPR002902 -
Phco6g02712 666 ProSiteProfiles Gnk2-homologous domain profile. 131 238 IPR002902 -
Phco6g02712 666 Pfam Protein tyrosine and serine/threonine kinase 341 601 IPR001245 GO:0004672|GO:0006468
Phco6g02712 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 20 124 - -
Phco6g02712 666 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Phco6g02712 666 FunFam cysteine-rich receptor-like protein kinase 10 413 611 - -
Phco6g02712 666 Gene3D Phosphorylase Kinase; domain 1 297 412 - -
Phco6g02712 666 Gene3D - 21 123 IPR038408 -
Phco6g02712 666 Gene3D - 138 238 IPR038408 -
Phco6g02712 666 FunFam Cysteine-rich receptor-like protein kinase 10 134 238 - -
Phco6g02712 666 MobiDBLite consensus disorder prediction 636 666 - -
Phco6g02712 666 Gene3D Transferase(Phosphotransferase) domain 1 413 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02712 Phco-Chr6 48657341 48660476 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02712 PK_Tyr_Ser-Thr 1.4e-47 CL0016