Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02711 ATGGCCTCTGTGTCTTTCACCCTCTTTTCCTTTCTCCGTTGTCTCTGTGTCATAGTAATCTTAGCACAAAGCAGTGCCCAAACACCCTGTGATAACACCAAAGGCAACTACACAATAAACAGCACCTATCACAACAACCTCAACACCCTTTTATCCCGTTTCTCTTCCTACTCACAAATCAACTACGGTTTCTACAATTTCTCATATGGCCAAGGTGCAGACAAAGTATACGCCATTGGGCTCTGTAGAGGCGATCTTAAGCCCGATGAGTGCCTTAAATCCCTCAATGATTCGAGAGTGTCTCTGGCAGAGCGTTGTCCAAACCAGAAGGAGGCCATTTGGTGGACGGTAGAGTGCATGTTGCGCTACACTAACCGCTCCATATTTGGTGTTATGGAAAACCAACCTACGAATGATAACTACTACGATTTGAATGTAACGGGTTCGGTGGAACAATTCAATACAGCGCTGGAGAGCTTGATGAGAAATCTAACACGCATAGCTGCATCAGGTGACTCTCGCCGTAAGTATGCTACTGCCAGTGCTCATGTTTCAAATTTTCAAACCATATACGGTCAAGCACAGTGTACTCCTGATTTGTCATCCGAAGATTGCACTAAGTGCTTGGATGAAGCTATCTCAAATATCCCACGGTGTTGTAGTGGCAAGGCTGGAGGCAATGTTGTAAAACCCAGTTGTAGAATTAGGTTTGACCCCTACTCCTTCTATGGGCCTACGCTGAATATAGACCTCGATGCGCCACCGTCACCGTCCACCAACAACACTTCTTCTTCACAAGGAAAGAGTAACAGATCACGGACTATCATCGCCATAGTAGTTTCAGTAGCTTGTGTTGTTTTGGTGCTCACTCTTCTCTGCATCTATCTAAGACTGAGGAAGCAAAGAAAAAAAATTGAATTTGAAAGAGAAGAAGAAAGTGAAGATGAAATTGCATTTACTGAGCCATTGCAAAATAACTTCAACACCATACGTATTGCTACCAATGGATTCGCTGATTCTAATAAACTTGGACAAGGCGGGTTTGGAGCTGTTTACAAAGGTCAGCTTTCTAATGGACAAGAGATTGCTGTCAAAAGGCTGTCAAGGAATTCTGGGCAAGGGGATTTGGAATTTAAGAATGAAGTGGTTTTATTGGCCAAGCTTCAGCATCGAAATTTGGTTAGGTTACTTGGCTTCGGCCTGGAAGGAAGAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTAATATTTGATCCAACCATGAAACCACAATTGAACTGGGAAAGGCGCTACAAAATCATTAGCGGTATTGCTCGAGGCATTCTCTACCTTCACGAAGATTCTCGACTACGGATAATACATCGTGATCTCAAAGCAAGTAATATTCTCTTGGACCATGAGATGAATCCTAAGATAGCAGATTTTGGTATGGCAAGACTAGTTTTAATGGATCAAACTCAAGCAAAGACGAGTAGAATTGTTGGAACTTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGTCAGAAAAACAGTGGAATTAATAATGGAGAGAATATAGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCAATAAATGTTGTAGATCCATCACTGAACAGCAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAGTTGACAGACCGACCATGGCTAACATTATACTGATGCTTAATAGCCATTCTCTGAGTCTCCCTATTCCTGCAGAACCAGCGTTCTATGTGAACAGTAGAACTAGAAGCCTTCCAGAGACGCAATCATGGGAGTATAATTCAAGGGAAACAGGATCAACTGAAGCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACCGAGTTATACCCTCGCTAG 2010 0.4204 MASVSFTLFSFLRCLCVIVILAQSSAQTPCDNTKGNYTINSTYHNNLNTLLSRFSSYSQINYGFYNFSYGQGADKVYAIGLCRGDLKPDECLKSLNDSRVSLAERCPNQKEAIWWTVECMLRYTNRSIFGVMENQPTNDNYYDLNVTGSVEQFNTALESLMRNLTRIAASGDSRRKYATASAHVSNFQTIYGQAQCTPDLSSEDCTKCLDEAISNIPRCCSGKAGGNVVKPSCRIRFDPYSFYGPTLNIDLDAPPSPSTNNTSSSQGKSNRSRTIIAIVVSVACVVLVLTLLCIYLRLRKQRKKIEFEREEESEDEIAFTEPLQNNFNTIRIATNGFADSNKLGQGGFGAVYKGQLSNGQEIAVKRLSRNSGQGDLEFKNEVVLLAKLQHRNLVRLLGFGLEGRERLLVYEFVPNKSLDYLIFDPTMKPQLNWERRYKIISGIARGILYLHEDSRLRIIHRDLKASNILLDHEMNPKIADFGMARLVLMDQTQAKTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSGINNGENIEDLLSFAWRNWKEGKAINVVDPSLNSNSRNEMLRCIHIGLLCVQENLVDRPTMANIILMLNSHSLSLPIPAEPAFYVNSRTRSLPETQSWEYNSRETGSTEAILKSAQESENEASITELYPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02711 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Phco6g02711 669 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02711 669 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 128 - -
Phco6g02711 669 Gene3D - 24 127 IPR038408 -
Phco6g02711 669 Gene3D - 136 242 IPR038408 -
Phco6g02711 669 ProSiteProfiles Gnk2-homologous domain profile. 25 128 IPR002902 -
Phco6g02711 669 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Phco6g02711 669 FunFam Cysteine-rich receptor-like protein kinase 10 299 412 - -
Phco6g02711 669 Gene3D Phosphorylase Kinase; domain 1 299 412 - -
Phco6g02711 669 Pfam Salt stress response/antifungal 150 238 IPR002902 -
Phco6g02711 669 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Phco6g02711 669 FunFam cysteine-rich receptor-like protein kinase 10 413 614 - -
Phco6g02711 669 SMART serkin_6 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02711 669 Pfam Protein tyrosine and serine/threonine kinase 341 605 IPR001245 GO:0004672|GO:0006468
Phco6g02711 669 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Phco6g02711 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 666 - -
Phco6g02711 669 CDD STKc_IRAK 343 608 - -
Phco6g02711 669 Gene3D Transferase(Phosphotransferase) domain 1 413 614 - -
Phco6g02711 669 SUPERFAMILY Protein kinase-like (PK-like) 319 607 IPR011009 -
Phco6g02711 669 ProSiteProfiles Gnk2-homologous domain profile. 134 242 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02711 Phco-Chr6 48651018 48654135 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02711 PK_Tyr_Ser-Thr 5.1e-46 CL0016