Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02708 ATGGTTTTCTACAATTTCTCATATGGTCAAAACAGTGACAAAGTAAACGCCATTGGGCTGTGCAGAGGAGATGTTAAGCCTGATGAGTGCCGCAGTTGCCTCAACGATTCTGCACTCACAATTACACAGCTTTGTCCAAACCAGAAAGAAGCACTTCTCTGGTTGAACACTAGCAAATGCCTATTGCGTTATTCTCACCGCACAATATTCGGTGTCATGGAATCTTCTCCTGGCTTCTACTTGTCCAACGTTAATAATGTAACGGAAGCAGATAAGTTCAACCAAGCACTCTCCAACTTAATGAGGAATCTCACAGTCGTGGCTGCATCAGGTGACTCTCGTCTTAAGTATGCTACGGACAGTGCAATTGCTGCAAATTTTAAAACCGTATATGGTCTTGTGCAATGCACCCCTGATTTGTCTGAGACAGACTGCAATAGATGCTTGGATGGGGCTATCTCAGAAATCCCATCGTGTTGTGGGAACAAGATGGGTGGAAGAGTTCTTAGACCAAGTTGTAATATTAGATTCGAAAGCGCAATCTTCTACGATCAAACGCCTAAATTAGACCCTGATGTAACACCACCATCTCCATCACCTCCTTCCTCCTTCACTAACACTTCCCCCAAAGAAAGCAACAACACAATAACAATTGTCATTGCCGTTGTCGTTTCTACTGTTGTTGTTGTTGCTGTCATCTCCCTCCTTTGTCTCTGCAGATATTTAAGGAGGAGGAAGGCAAGAAAAAGTCCAACAGTTAATCAAGATGATGATGATGACTTTGAAATTTCTCAGTCATTGCAATTCGACTTCGACACAATACGAGTTGCTACAGAAGACTTCTCTAATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTTCCCAATGGACAGATGATTGCAGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTTATCTATGAATTTGTTCCTAACAAAAGCCTTGATTATTTTATATTTGATCCAGCCAAGAAAGCCCAATTGGATTGGGAAATGCGATATAAAATCATTAGAGGTATTGCCCGAGGGCTTCTCTACCTTCACGAAGACTCTCTTCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTACTAGATGAAACTCATGCAAATACAAATAGAGTTGTGGGAACCTATGGATATATGGCACCGGAGTATATAATGCAAGGACAATTTTCGGTGAAATCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTGGCATTCGTCATGGGGAGAATGTAGAGGATCTACTAAGCTTCACATGGAGAAACTGGAGGGATGGAACAGCCATAAACATTGTAGATCCATCATTGGAAAACAATTCACGAAATGAAATGATGAGATGCATACATATTGGTTTGCTCTGTGTTCAAGAAAATTTAACTGACAGACCAACCATGACGACCATTATGCTCATGCTCAGTAGCTATTCTCTCGGTCTCCCCATTCCTTCTGAACCTGCATTTTATGCCAATAGTACAGCTAGAAGCCTTCCAGCCACGTTGTCATGGGGGCATAATTCAAGGGCAACAGCAAACCAATCAACAAACAAATATGCTCAAGAGTCAGAAAATGAGAATTCAATTACTGAGCCGTATCCTCGCTAG 1839 0.4165 MVFYNFSYGQNSDKVNAIGLCRGDVKPDECRSCLNDSALTITQLCPNQKEALLWLNTSKCLLRYSHRTIFGVMESSPGFYLSNVNNVTEADKFNQALSNLMRNLTVVAASGDSRLKYATDSAIAANFKTVYGLVQCTPDLSETDCNRCLDGAISEIPSCCGNKMGGRVLRPSCNIRFESAIFYDQTPKLDPDVTPPSPSPPSSFTNTSPKESNNTITIVIAVVVSTVVVVAVISLLCLCRYLRRRKARKSPTVNQDDDDDFEISQSLQFDFDTIRVATEDFSNSNKLGQGGFGAVYRGRLPNGQMIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPAKKAQLDWEMRYKIIRGIARGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDETHANTNRVVGTYGYMAPEYIMQGQFSVKSDIFSFGVLLLEIVSGQKNSGIRHGENVEDLLSFTWRNWRDGTAINIVDPSLENNSRNEMMRCIHIGLLCVQENLTDRPTMTTIMLMLSSYSLGLPIPSEPAFYANSTARSLPATLSWGHNSRATANQSTNKYAQESENENSITEPYPR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02708 612 FunFam cysteine-rich receptor-like protein kinase 10 357 558 - -
Phco6g02708 612 ProSiteProfiles Protein kinase domain profile. 281 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02708 612 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 609 - -
Phco6g02708 612 MobiDBLite consensus disorder prediction 188 209 - -
Phco6g02708 612 SMART serkin_6 281 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02708 612 Pfam Protein tyrosine and serine/threonine kinase 284 549 IPR001245 GO:0004672|GO:0006468
Phco6g02708 612 ProSiteProfiles Gnk2-homologous domain profile. 1 69 IPR002902 -
Phco6g02708 612 Pfam Salt stress response/antifungal 7 66 IPR002902 -
Phco6g02708 612 Pfam Salt stress response/antifungal 85 179 IPR002902 -
Phco6g02708 612 Gene3D Transferase(Phosphotransferase) domain 1 357 556 - -
Phco6g02708 612 ProSiteProfiles Gnk2-homologous domain profile. 75 182 IPR002902 -
Phco6g02708 612 MobiDBLite consensus disorder prediction 585 612 - -
Phco6g02708 612 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Phco6g02708 612 FunFam Cysteine-rich receptor-like protein kinase 10 78 182 - -
Phco6g02708 612 FunFam Cysteine-rich receptor-like protein kinase 10 243 356 - -
Phco6g02708 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Phco6g02708 612 Gene3D - 78 182 IPR038408 -
Phco6g02708 612 Gene3D - 2 68 IPR038408 -
Phco6g02708 612 Gene3D Phosphorylase Kinase; domain 1 243 356 - -
Phco6g02708 612 SUPERFAMILY Protein kinase-like (PK-like) 269 579 IPR011009 -
Phco6g02708 612 CDD STKc_IRAK 287 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02708 Phco-Chr6 48637564 48640301 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02708 PK_Tyr_Ser-Thr 6.8e-48 CL0016