Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02705 ATGAAACTCACTGAAGGAAATTCTTGTTATAAAGTGAAAGCACCATTAATACGCAAAGCTTCAGTTAACGTTGTTCCTTGTTCTGATTATGGGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATATCTCAAGCCAACGCCCAGTATCTGTTCCAATCCTGTGATAACAGCAACGGCAACTACACAGCCAATAGCACCTATAACACCAATCTCATCACCCTTTTATCCACTCTTTCTTCCAACACTGAAATCAACTATGGTTTCTACAACTTCTCTTATGGTCAAAACGCAGACAAAGTTAACGCCATTGGGTTGTGCAGGGGAGATGTGGAGCCAAATGAGTGCCGCAGTTACCTCAAAGATGCTGGAGGCAATATCACACAGCTTTGTCCAAACCAGAAAGAGGCTTCTATATATAATGACTACTGCATGTTGCGCTACTCAAACCGCTCAATATTCGGGGTATTGGACATTTCTCCTGATTTTTATTTGTCCAACGTAAACAATGCAACAGAAGCGGATGAGTTCAATCGAGTGCTCCAAAACTTATTGAGGGAACTCAAAGACAAAGCAGCATCCGGTGACTCTCGCCGTAAGTATGCTTCGGATAATAACACGACTAGCAATTTTCAAGCCATATATGGTCTTGTGCAGTGCACCCCTGATTTGACTCAGACGGACTGCAATGATTGCTTGGATGAGGCTATCGAACGAATCCCATTTTGCTGCGACGACAAGAGAGGTGGTAGAGTTGTTGGACCCAGTTGTAATATTAGATATGAAGACCACCGCTTCTACGAACAAACCACGATAATAGACCCAGAGACACCACCACCATCCACAATTAACACTTCCCCGGAAGAAAGTAGCAATACAACAACAATTGTCATTGCCGTAATTGTGCCAACTGCTGCTGCTGTTGTTTTGGTCATCTGTCTCTTCCTGTATTCAAGGAGGAGGAAGGCAAGGAAAAATCCTGCAGGCGAGACCATTAAAGAAGAAGAAGATGAAGAAGAGGAGGATGAAATTAAAATTGTTGAGTCCTTGCAATTCAACTTTGACACAATACGAGTTGCTACCGAGGACTTCTCTGCTTCTAATAAACTTGGACAAGGAGGATTTGGAGTTGTTTACTGGGGTAGGCTCTCCAATGGACAGATGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGGCAAGGAGATACGGAATTTAAGAATGAAGTGGTTTTAGTGGTCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAGCCATGAAAGCCCAATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGAGATCTCAAAGCAAGCAACATTCTCTTAGACGTAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCTAGACTGGTTTTAATGGATCAAACTCAAGCAAATACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCGGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAATAGTGGAATTAATAATGGAGAGAATATGGAGGATCTACTAAGCTTTGCTTGGAGAAACTGGAAGGAGGGAAAGGCTATAAATATTGTAGATCCGTCACTGAACAACAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATGTAGTTGACAGACCAACCATGGCTAACATTGTGCTAATGCTTAACAGCTATTCTCTGAGTCTCCCTATTCCTGCAGAACCAGCATTTTATATGAACAGTATCACTAGAAGCCTTCCAGAGATGCAGTCATGGGAGTATAATTCAAGGCGAACAAGATCAAGCGAAGCGATATTTAAATCAGTTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2103 0.4151 MKLTEGNSCYKVKAPLIRKASVNVVPCSDYGMGAVSCMLLFFLCCLISQANAQYLFQSCDNSNGNYTANSTYNTNLITLLSTLSSNTEINYGFYNFSYGQNADKVNAIGLCRGDVEPNECRSYLKDAGGNITQLCPNQKEASIYNDYCMLRYSNRSIFGVLDISPDFYLSNVNNATEADEFNRVLQNLLRELKDKAASGDSRRKYASDNNTTSNFQAIYGLVQCTPDLTQTDCNDCLDEAIERIPFCCDDKRGGRVVGPSCNIRYEDHRFYEQTTIIDPETPPPSTINTSPEESSNTTTIVIAVIVPTAAAVVLVICLFLYSRRRKARKNPAGETIKEEEDEEEEDEIKIVESLQFNFDTIRVATEDFSASNKLGQGGFGVVYWGRLSNGQMIAVKRLSRDSGQGDTEFKNEVVLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDVEMNPKIADFGMARLVLMDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKAINIVDPSLNNNSRNEMLRCIHIGLLCVQENVVDRPTMANIVLMLNSYSLSLPIPAEPAFYMNSITRSLPEMQSWEYNSRRTRSSEAIFKSVQESENEASITELYPR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02705 700 Pfam Salt stress response/antifungal 59 154 IPR002902 -
Phco6g02705 700 Pfam Salt stress response/antifungal 173 267 IPR002902 -
Phco6g02705 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Phco6g02705 700 SMART serkin_6 368 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02705 700 ProSiteProfiles Gnk2-homologous domain profile. 163 270 IPR002902 -
Phco6g02705 700 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Phco6g02705 700 Pfam Protein tyrosine and serine/threonine kinase 370 636 IPR001245 GO:0004672|GO:0006468
Phco6g02705 700 ProSiteProfiles Gnk2-homologous domain profile. 54 157 IPR002902 -
Phco6g02705 700 Gene3D - 166 270 IPR038408 -
Phco6g02705 700 Gene3D - 50 156 IPR038408 -
Phco6g02705 700 CDD STKc_IRAK 374 639 - -
Phco6g02705 700 FunFam cysteine-rich receptor-like protein kinase 10 444 645 - -
Phco6g02705 700 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 695 - -
Phco6g02705 700 Gene3D Phosphorylase Kinase; domain 1 330 443 - -
Phco6g02705 700 Coils Coil 178 198 - -
Phco6g02705 700 ProSiteProfiles Protein kinase domain profile. 368 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02705 700 FunFam Cysteine-rich receptor-like protein kinase 10 165 270 - -
Phco6g02705 700 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 52 157 - -
Phco6g02705 700 Gene3D Transferase(Phosphotransferase) domain 1 444 645 - -
Phco6g02705 700 SUPERFAMILY Protein kinase-like (PK-like) 353 671 IPR011009 -
Phco6g02705 700 FunFam Cysteine-rich receptor-like protein kinase 10 330 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02705 Phco-Chr6 48617530 48620702 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02705 PK_Tyr_Ser-Thr 5.5e-46 CL0016