Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02701 ATGGTCTCTGAAACAGTGCCCTTTTTCCTGTCCCTTCTGGGTATTCTTATATCTCAAGCTATTGCCGAGCCAGACTACCAATACAATTACACAGTCTGCTACAAAAGTGGAGACTATGCCCCTAATACCACCTACCACACTAACCTCAATGCTGTTCTTTCAAGGCTCACTTCTAACACCCAAATTGACTATGGCTTCTACAACTCCTCCTATGGCCAAGACACTGATAGAGTCTACGCAACTGGCCTCTGTAGAGGAGATGTTAGCCCACATACTTGCCTTACTTGCCTCAACAATTCTACTTCCCTTCTCCTCAAGTACTGTCCACATCAGAAGGAAGCTGTGGGAGGATATGATTTATGCATGTTACACTATGCAGATCACTCAATACTTGGTTACCAAGACTCTAGTTTCGGCTTCTATTTTTGGTGGGAAACTAATGTAACAGATTGGAATCAGTACAGTTATGTGCTGAACAAGTTGCTGTCAAAACTAAGAGAGAAAGCTGCAACAACTGACTCCCATCTCAGAAGCAAATTTGCTGCAGGAAATGCAATTGCTCCGAGTTCTGAATCTATATATGCCGTTGTTCAGTGCTCACCTGAATTGACAGTGGCAGAGTGCAACGACTGCTTAGGTGGTGCCTTTTCAGAAATATCCAAATATTGTAATAACAGATCAGGAGGCGGAGTTGTTAAATTAAGCTGTAATTTCAGATATATGAACTCCAGCTTCTATGAGCCTACTGCGGATACACTAACACTACAATTGCCACCACAAGGATCTGCATCTCCTCCTTCATCGTCACCCACACCCTCCACCACTTCAAATTCCTCGGAGAGTACTTATCATGGAAAAAGCAACAGATTACAACCTGTCAACGCCAAGTACGTTGTGCCAATTCTTGTCTTTATTGGGATGCTGATTTTTATTTGCATCCACTTAAGAGTTAGGAAGCCAAGAAAGTATTTTGAGAGTGAAGCTAAGGTTGATGATGAAATTAGACAATTAGAGTCATCACAATTTGACCTTGACACCATCAGAGTCGCTACAAACAACTTCTCTGATGCAAACAAGCTTGGACAAGGAGGATTTGGACCTGTTTACAAAGGGACGATCTTCAATGAACAAGTAGTAGCAGTCAAAAGGTTATGTAGAAACTCAGGCCAAGGAGATATTGAATTCAAGAATGAAGTGCTATTAATGTCAAGGCTTCACCACCGAAATTTAGTTAGGCTCCTTGGTTTCTGTTTTGAAAGTGAAGAACGACTCCTTATCTACGAGTTTCTTCCCAACAAAAGTCTTGACAACTTCATATTTGATCACATCGGGCGAGCACATTTGGATTGGAAAAAACGCTACAGTATAATTAAAGGCATTGCATGTGGCCTTCTTTATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGAGATCTCAAATTGAGCAATATTCTTTTAGATGACGACATGAATCCTAAGATTTCAGATTTTGGTTTTGCAAGGATTTTTAATGTGGATCAAACTCAGTTTAATGCAAGTAAAATTGCAGGAACCTTTGGATACATGGCACCTGAGTATGCAAGACATGGAAAACTCTCGATGAAGTTAGATGTCTTCAGTTTTGGTGTAATAATGCTAGAGATTGTAAGTGGCCTAAAGAATGGTGGAGTTCGTAATGGAGAGAATGTGGAGCATCTATTAAGCTTTGCTTGGAAAAACTGGAGGAAAGGGAGAACGGCTAATATTGTGGATCCCACCTTAAATAATGCTTTCAGAGATGAAATGGCGAGATGCATTCACATTGGACTACTTTGTGTTCAAGAAAAGGCTGCTGATAGACCAACAATGGCATCAGTGGTGCTTATGCTTGATAGCCACTCTTTTACTCTACCAGTTCCATTGCAACCTGCTTATTTTATGAAAAATAGTTGTTCATCAGTCATCCAGTTTTCGAGGTGTAGTTCTATGGAAACAGGGTCAAATGAGCAGAAAAGTTACCGTGCTGATGCATCAACTAATGAGGCTTCAATTAGTAGTCTATATCCTCGTTAA 2055 0.4068 MVSETVPFFLSLLGILISQAIAEPDYQYNYTVCYKSGDYAPNTTYHTNLNAVLSRLTSNTQIDYGFYNSSYGQDTDRVYATGLCRGDVSPHTCLTCLNNSTSLLLKYCPHQKEAVGGYDLCMLHYADHSILGYQDSSFGFYFWWETNVTDWNQYSYVLNKLLSKLREKAATTDSHLRSKFAAGNAIAPSSESIYAVVQCSPELTVAECNDCLGGAFSEISKYCNNRSGGGVVKLSCNFRYMNSSFYEPTADTLTLQLPPQGSASPPSSSPTPSTTSNSSESTYHGKSNRLQPVNAKYVVPILVFIGMLIFICIHLRVRKPRKYFESEAKVDDEIRQLESSQFDLDTIRVATNNFSDANKLGQGGFGPVYKGTIFNEQVVAVKRLCRNSGQGDIEFKNEVLLMSRLHHRNLVRLLGFCFESEERLLIYEFLPNKSLDNFIFDHIGRAHLDWKKRYSIIKGIACGLLYLHEDSQQRIIHRDLKLSNILLDDDMNPKISDFGFARIFNVDQTQFNASKIAGTFGYMAPEYARHGKLSMKLDVFSFGVIMLEIVSGLKNGGVRNGENVEHLLSFAWKNWRKGRTANIVDPTLNNAFRDEMARCIHIGLLCVQEKAADRPTMASVVLMLDSHSFTLPVPLQPAYFMKNSCSSVIQFSRCSSMETGSNEQKSYRADASTNEASISSLYPR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02701 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Phco6g02701 684 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02701 684 FunFam Cysteine-rich receptor-like protein kinase 28 430 632 - -
Phco6g02701 684 SMART serkin_6 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02701 684 MobiDBLite consensus disorder prediction 256 287 - -
Phco6g02701 684 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Phco6g02701 684 CDD STKc_IRAK 360 625 - -
Phco6g02701 684 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 681 - -
Phco6g02701 684 Gene3D Transferase(Phosphotransferase) domain 1 430 630 - -
Phco6g02701 684 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Phco6g02701 684 FunFam Cysteine-rich receptor-like protein kinase 10 317 429 - -
Phco6g02701 684 Pfam Protein tyrosine and serine/threonine kinase 358 622 IPR001245 GO:0004672|GO:0006468
Phco6g02701 684 Gene3D - 26 129 IPR038408 -
Phco6g02701 684 Gene3D - 136 245 IPR038408 -
Phco6g02701 684 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Phco6g02701 684 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Phco6g02701 684 SUPERFAMILY Protein kinase-like (PK-like) 340 653 IPR011009 -
Phco6g02701 684 Gene3D Phosphorylase Kinase; domain 1 317 429 - -
Phco6g02701 684 FunFam Cysteine-rich receptor-like protein kinase 10 139 245 - -
Phco6g02701 684 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 130 - -
Phco6g02701 684 MobiDBLite consensus disorder prediction 662 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02701 Phco-Chr6 48606075 48609275 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02701 PK_Tyr_Ser-Thr 1e-44 CL0016