Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02698 ATGGTCTCAAGAATGACCCTATTCCTTTGTATGCTTGTCATGCTCCTAACAATATCTCAATCCTATGCTCAAACAAGTTTCTTACGCAACTTCTGTATGAATGACAAGGGTAATTACACTGCTAACAGCACCTACCACAACAACCTCAATACCCTTTTGTCCAACCTCTCTTCAAACACAGATATCGACTATGGCTTCTACAATTTTTCATATGGCCAAGATAGTAACACAGTAAACGCCATTGGGCTGTGCAGAGGAGATGTTAAGCCAGATGCTTGCCGTAGATGCTTGAATGATTCAAAAGTCCTTCTCACGCAACTGTGTCCAAATCAGAAGGAGGCAATTGGTTGGTATGACCAATGCATGTTACGCTATTCCAACCGCTCACTATTCAACACCATGGAAACCTCACCTAATTTCTATTTGTGGAACCCTGGTAATGCAACAGATATTGATCAATTCAATCAAGTGTTAAGGAACTTGCTAGATAGCCTCATTGGCCAAGCTACACTAGGCAACTCCCAGCGTAAGTTTGCTGCAGCACATGTTTCAGGATCAGTCTTTCAGACTATATATGGTCTTGTGCAGTGTACACCTGACTTGTCAGAACAAGATTGCAGTGCATGCTTGACTGGGGCTATCTCAGAAATTCCACAATGTTGTGATGGCAAGAAAGGTGGTCGAATTTTAAGGCCTAGTTGTAACTTCAGATATGAGGTATACAGCTTCTATGATCCTACCAATGTTAAAATACCACCAGCATCAGCACCAAAGGTGTCTGTTCTTCCTCCTTTGTCAACAGATACCTTGTCCACAGAAGTTGAAGCGGAAAAAGATGAAGAAATTAGATCATCAGAAACATTGCAATTGGACTTCTCCACAATCATGACTGCTACAAACAACTTTTCTGATGCAAATAGGCTAGGACAAGGAGGATTTGGACCTGTTTACAAGGGTAAGCTCTCCAATGGTCAGGATGTTGCAGTGAAAAGGTTGTCTAAGAACTCCCTCCAAGGAGACATTGAGTTCAAGAATGAGGTGATGTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAAGCTGATAGGATTTTGCTTGGAAAGAACAGAAAGGCTACTGGTGTACGAATTTGTTCCCAACAAAAGCCTCGATTTCTTCATATTTGATGAAGTTAGGCGCGTACAATTGGATTGGGAAAAGCGACACAAAATTATAGGAGGCATAGCTAGAGGTCTTCTTTACCTTCACCAAGATTCACGTTTGACCATTATTCACCGTGATCTCAAAGCAAGCAACATTCTTTTAGATGCAGAGATGTGTTCTAAGATATCAGATTTTGGCATGGCAAGATTATTTGAAGTGGATCAGACTCAGGACAATACAAGTAGAGTTGTTGGAACCTATGGATATATGGCACCAGAGTATGTCTTCCGTGGACAATTCTCAGTGAAATCTGATGTTTATAGTTTTGGAGTATTGGTTCTTGAGATTGTAACTGGCCAGAAAAACAGTTGGGCATGTAGAGAGGAGAATGAAGGGGATCTTCTAACCTATGTTAGTAATAACTATTGTTTTAATGACTTGTTTTCCTTATCCTTAGAGAGGCTAGATTCCATTAGTCTCTTATAG 1629 0.407 MVSRMTLFLCMLVMLLTISQSYAQTSFLRNFCMNDKGNYTANSTYHNNLNTLLSNLSSNTDIDYGFYNFSYGQDSNTVNAIGLCRGDVKPDACRRCLNDSKVLLTQLCPNQKEAIGWYDQCMLRYSNRSLFNTMETSPNFYLWNPGNATDIDQFNQVLRNLLDSLIGQATLGNSQRKFAAAHVSGSVFQTIYGLVQCTPDLSEQDCSACLTGAISEIPQCCDGKKGGRILRPSCNFRYEVYSFYDPTNVKIPPASAPKVSVLPPLSTDTLSTEVEAEKDEEIRSSETLQLDFSTIMTATNNFSDANRLGQGGFGPVYKGKLSNGQDVAVKRLSKNSLQGDIEFKNEVMLVAKLQHRNLVKLIGFCLERTERLLVYEFVPNKSLDFFIFDEVRRVQLDWEKRHKIIGGIARGLLYLHQDSRLTIIHRDLKASNILLDAEMCSKISDFGMARLFEVDQTQDNTSRVVGTYGYMAPEYVFRGQFSVKSDVYSFGVLVLEIVTGQKNSWACREENEGDLLTYVSNNYCFNDLFSLSLERLDSISLL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02698 542 FunFam Cysteine-rich receptor-like protein kinase 10 138 243 - -
Phco6g02698 542 FunFam Lectin-domain containing receptor kinase A4.3 378 539 - -
Phco6g02698 542 SMART serkin_6 302 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02698 542 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Phco6g02698 542 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Phco6g02698 542 Gene3D - 136 243 IPR038408 -
Phco6g02698 542 Gene3D - 24 130 IPR038408 -
Phco6g02698 542 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Phco6g02698 542 ProSiteProfiles Protein kinase domain profile. 302 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02698 542 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 42 517 - -
Phco6g02698 542 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Phco6g02698 542 FunFam Cysteine-rich receptor-like protein kinase 10 266 377 - -
Phco6g02698 542 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 130 - -
Phco6g02698 542 SUPERFAMILY Protein kinase-like (PK-like) 282 527 IPR011009 -
Phco6g02698 542 Gene3D Phosphorylase Kinase; domain 1 266 377 - -
Phco6g02698 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Phco6g02698 542 Gene3D Transferase(Phosphotransferase) domain 1 378 538 - -
Phco6g02698 542 Pfam Protein tyrosine and serine/threonine kinase 306 508 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02698 Phco-Chr6 48587326 48590184 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02698 PK_Tyr_Ser-Thr 5.5e-47 CL0016