Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02690 ATGTCGTTACTCGTTTACGTTTTCCTTTTGGGTTTCTTCAATTTTTCCATAACCGATGCCACTGAAATTTACTACCTCAATCACAGTTGTTCAAGCAACAAAACCTTCACTCCAAGCACCGCCTACGAAACCAACCTCCGAACCCTCCTCACGTCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACACCACAACGGGTGGTGGAGACGGCAGCGAAATCATTTACGCCTCCTTCATGTGCCGCGGCGATGTCAGCAACCACACGTGCCAAGAGTGCGTTAGAACTGCAGCCGAACATATATCCAAAGTGTGCCCCATCTCCAAAGAGGCCTTAATTTGGTACCACGAATGTTTGGTTCGTTATTCCAACCGCTGTTTTTTCTCCACCTTGGAGGAGTGGCCAAGGTTCAACTTCATGGATTACAACGTGACCAATTCAAGAAATGAGAAAGGAAGCTATGGGTTCTGGTTGTTATCCAAAACGCTGAGTGATGCTGTGGGTGAGGCAGCGAACGGTGGTCCCGCAGGCACCATGAAATTTGCAACAAAAAACGCTACCGTGTTTGGGTCTCAGAAAATTCATACTCTTGTTCAGTGCACGCCAGATCTATCAAGCGAAGATTGCAGTAACTGTTTGGGTGATATTATGAGAGATATTCCTTTGTGTTGCCTTGGAAGGATAGGTGGAATGGTTCTATATCCCAGCTGCACTTTGATGTTTGGTACAAGACATTTCTACAGAGACGTTAATGCCATCCAAGAATCAAAACCTTCAGGAATTAAAATGGGTTCATCAGGATCAATTATCACAGTTGTCATCCTTGTCGTTTTGACAGTGCTGATCTCTTTTCACTGTTATTTCTTATGGAGAAGAGCAAGAAAGCGCAAGTATAAGATTCTTCTAAAAGAAAACTTTGGTCAAGAAAGTGTGACTTTAGAAGGATTACAATTTGATTTAGCTATAATTATAGCAGCAACAAATAACTTTTCAAATGAAAACAAGATTGGAAAAGGTGGTTTTGGAGAAGTTTACAAGGGTATCCTTTCTTGTGGACTACATATAGCAGTAAAAAGATTATCACAAAGTTCTACACAAGACCAAGATCGTGGAAAGACCAAACGAATAGTTGGAACATATGGTTATATGTCTCCCGAATATGCAATGTTTGGACAATTTTCTGAAAAATCAGATATTTTTAGTTTTGGAGTTATGATTTTGGAGATTGTTACAGGAAAAAAGAACATAAATTTTCATGAATCACAATACATGCCAAATGGACTCATGAGCTATCCACTTTGCATCATTGACCCAACGCCTTTAGCCTCTGACCTCGAAACCAGCGCCCCTGCTCCATTTAAAGACCTCAATCCAATTCATACACTGCGCCGTCTCCGACTAAGTTTCCCTTCATGCGCATCTGCATGA 1431 0.4179 MSLLVYVFLLGFFNFSITDATEIYYLNHSCSSNKTFTPSTAYETNLRTLLTSLSSHATTAQFFNTTTGGGDGSEIIYASFMCRGDVSNHTCQECVRTAAEHISKVCPISKEALIWYHECLVRYSNRCFFSTLEEWPRFNFMDYNVTNSRNEKGSYGFWLLSKTLSDAVGEAANGGPAGTMKFATKNATVFGSQKIHTLVQCTPDLSSEDCSNCLGDIMRDIPLCCLGRIGGMVLYPSCTLMFGTRHFYRDVNAIQESKPSGIKMGSSGSIITVVILVVLTVLISFHCYFLWRRARKRKYKILLKENFGQESVTLEGLQFDLAIIIAATNNFSNENKIGKGGFGEVYKGILSCGLHIAVKRLSQSSTQDQDRGKTKRIVGTYGYMSPEYAMFGQFSEKSDIFSFGVMILEIVTGKKNINFHESQYMPNGLMSYPLCIIDPTPLASDLETSAPAPFKDLNPIHTLRRLRLSFPSCASA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02690 476 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 12 255 - -
Phco6g02690 476 SUPERFAMILY Protein kinase-like (PK-like) 319 417 IPR011009 -
Phco6g02690 476 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Phco6g02690 476 Gene3D Phosphorylase Kinase; domain 1 288 370 - -
Phco6g02690 476 ProSiteProfiles Gnk2-homologous domain profile. 24 128 IPR002902 -
Phco6g02690 476 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Phco6g02690 476 Pfam Protein tyrosine and serine/threonine kinase 363 417 IPR001245 GO:0004672|GO:0006468
Phco6g02690 476 Gene3D Transferase(Phosphotransferase) domain 1 371 434 - -
Phco6g02690 476 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 128 - -
Phco6g02690 476 Gene3D - 22 128 IPR038408 -
Phco6g02690 476 Gene3D - 140 247 IPR038408 -
Phco6g02690 476 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Phco6g02690 476 Pfam Salt stress response/antifungal 160 243 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02690 Phco-Chr6 48518165 48529879 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02690 Stress-antifung 7.2e-09 No_clan