Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02688 ATGGCTTGGTATCTCAAATATGTGATACCATTAATCTTTTCTATCACCCTCAACTTCACTGCGATCAGAGCACAGGGCCTTTCTTATCAGTACCAAGTTTGTTCAACAAATAAATTCACTGCCAATAGCACCTTTCAGAGGGACCTCACAACCCTCTTCTCTTCCTTATCTTCCAAAGCCTCCAGCAATGTCGAATTCTTCAACAACACCGTCACGGGGACAAACTCCTCCGACACAGTCCACGGACTATTCATGTGCAGGGGTGACATCCCCTCCGACCTATGCAATCACTGTGTCGGAAACGCAACACAGAGACTATCCACACACGCAGACTGCACCTTGTCCAAAGCAGCAGTGGTGTATTACGACGAGTGCATAGTAAGGTATTCCAACCGTTCTTTCTTCTCCACCCTAACCATGCAAGCCGGCTATGCCCTTTGGAACCCCACCAATATGACCAACCAAGAAAGCTTCAAGACTTTACTCTATGACACCATGAACAAAACTGCGGATGATGCAGCCCATTTTCCTACTGGTGCTAAAAAATTCGCCACAAGGGAAACGAGCATAGACATATTTCAGAAGCTTTATTGTCTTGCTCAGTGCACACAAGACCTGTTTCCCGGAGATTGCAGAAGCTGTCTGGATAGCTTGATAAACTCGGATCTTCCAGGGTGCTGTGCAGGATCGCAGGGAGGAAGAGTTTATTACCCAAACTGCATCATCAGGTTTGAAATTTACCCTTTTTTTCGATCCCTTTCCACGGCACCAACGCCATCACCGGCAGGACTCGTTCCTCCAGCCAATTCAGGAGAAAATAAAAGAAGTAGATCTCGAACAATTATCTTAATTGTTGTTCCCATTGTTAGTTTGGCGACTTTCTTTACTCTGTTATACTATATGCTATGGAGAAGAGCAAGAAAGAGTAGCAAGATTCTTCTTAGACAAAACTTTGGGGAAGAAAGTTCCACTCTACAGGGGTTGCAATTTGATTTGGCCACGATTAAAGTAGCAACAAATAATTTCTCCCCTGAGAACAAGATTGGAAAAGGTGGATTTGGAGACGTTTACAAGGGTATTCTTGTTGATGGACGATGTATTGCTGTTAAAAGACTTTCAAAAAGTTCTAGACAAGAAACTAATCGAATAGTTGGAACATATGGTTATATGTCTCCTGAATATGCAATGTTTGGACAATTCTCTGAAAAATCAGATGTTTTTAGTTTTGGAATTATGATTCTTGAGATTATTACTGGTAAAAAAAATGGAAATTCTTATAAATCCAACCAAGAGGACGGAGGCTTGATGAGTAATGTTTGGAGAAATTGGACAAATCAAACACCATTGAGTATACTTGAACCAAATATGAAAGAAAATTACTTTCAAACTGAAGTGATTCGATGCATTGAAATTGGTTTATTATGTGTTCAAGAAAATCCAAATGTGAGACCTTCCATTGCTGAAGTTGTTTCTTATCTTAATGATCTCACAATTGAATTACCATCCCCTCAAGAACCAGCATTTTTCTCTCATGGAATAGATAAAAAAGTAGTCATGCAGCAGGAATCAAGTTCGAACTCATCTGTGATTGGTTCCATACCATTCTCTGTCAATGAAATGTCTATTAGTGACTTTTATCCACGATAA 1647 0.405 MAWYLKYVIPLIFSITLNFTAIRAQGLSYQYQVCSTNKFTANSTFQRDLTTLFSSLSSKASSNVEFFNNTVTGTNSSDTVHGLFMCRGDIPSDLCNHCVGNATQRLSTHADCTLSKAAVVYYDECIVRYSNRSFFSTLTMQAGYALWNPTNMTNQESFKTLLYDTMNKTADDAAHFPTGAKKFATRETSIDIFQKLYCLAQCTQDLFPGDCRSCLDSLINSDLPGCCAGSQGGRVYYPNCIIRFEIYPFFRSLSTAPTPSPAGLVPPANSGENKRSRSRTIILIVVPIVSLATFFTLLYYMLWRRARKSSKILLRQNFGEESSTLQGLQFDLATIKVATNNFSPENKIGKGGFGDVYKGILVDGRCIAVKRLSKSSRQETNRIVGTYGYMSPEYAMFGQFSEKSDVFSFGIMILEIITGKKNGNSYKSNQEDGGLMSNVWRNWTNQTPLSILEPNMKENYFQTEVIRCIEIGLLCVQENPNVRPSIAEVVSYLNDLTIELPSPQEPAFFSHGIDKKVVMQQESSSNSSVIGSIPFSVNEMSISDFYPR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02688 548 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 134 - -
Phco6g02688 548 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Phco6g02688 548 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Phco6g02688 548 Gene3D Phosphorylase Kinase; domain 1 332 389 - -
Phco6g02688 548 Gene3D Transferase(Phosphotransferase) domain 1 304 508 - -
Phco6g02688 548 Gene3D - 27 134 IPR038408 -
Phco6g02688 548 Gene3D - 140 249 IPR038408 -
Phco6g02688 548 SUPERFAMILY Protein kinase-like (PK-like) 331 517 IPR011009 -
Phco6g02688 548 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 380 543 - -
Phco6g02688 548 Pfam Protein tyrosine and serine/threonine kinase 380 493 IPR001245 GO:0004672|GO:0006468
Phco6g02688 548 ProSiteProfiles Protein kinase domain profile. 342 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02688 548 FunFam Cysteine-rich receptor-like protein kinase 25 142 249 - -
Phco6g02688 548 Pfam Salt stress response/antifungal 151 246 IPR002902 -
Phco6g02688 548 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Phco6g02688 548 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02688 Phco-Chr6 48505269 48508350 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02688 PK_Tyr_Ser-Thr 2.2e-09 CL0016