Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02686 ATGAGTGTTGAAGTTCTCATAAATAGTCATCACAAGAATTTCCTTGCTGCTACGCTGAAACCGTCCTCTGCCTCACTCAGCCTGCAAAAATTGCCCTCATTCGTGTTCGCGTCCAGAGTTCCTTCTTCACCTTATGAAAAAGACATGGCTTCATTTAACTTCTTCATTTTGCACCTAACCTTCTTTTCCCTCTTTCTTCCTTGCTCCCCTTCTCCTATCACCCAAGGTGCTTTGGACGGAGGTTCAAAAGCTTTCTATAACTGCACAAGGAACAGCACTTTTGCTTCCTATAGCGTGGCTTACCGTTCTAACGTCAAAACACTCCTAGATTGGCTCTCCTCCAATGTCACTAACAATACCAGATTCTACAACACCACAGTAGCTAGCAGACACACAGCAGACACTGCCTATGGTAGCTTCCTTTGTACAATAGTCAACAACCCTGAAATCTGCCAACGATGCGTGAAGGAAGCTGCCAAACTTATATCATCGCTTTGCACCATTGCAAAAGAGGCTATCATATGGTACGAACTGTGCTATGTGCGCTACTCTGATCGTCGTTTCTTCTCCACTGTGGAGGAGAGTCCTAAACTCTCCTTTATGAATGATCAGGACTACGTGGGTGACGTTGGGCGCTTCAACAATATTGTGTGGGATATGCTGAACGATTTGAGAAGTGAGGCAGCAAGTGCTTCTAGTAAAAGCGCTGATAAGTCTGTGAACATCACGGATAACCAAAAGTCGTATGGCTATGCTTGGTGCCTACCATACCTGACCAAAGAGAACTGCAGCTGGTGTCTTAGCGATGCCATAGCAGACATTCCAACCGGTTGCTGCAGAGGAAAATCTGGGGGACACATAATATTTCCTAGTTGTGGTGTTAGATACGAATTATTTCCATTCCATATGGCACATGTAAATAGTGGTTGGGAGTCTCCGCCACCATTTCCCGACAGTCCTCCACCTTTTGCTTCACCAGGGAAAAGAAAGCAGAAGACACTAACAATAATTGTGACTGTTGTTCCAATTGTTGTTTCACTGGTGCTTTTATCCTTGGGCTGCAGTTGTTTTCTACGTAGGAAAGAAACAAAGAATCGGCATGACATTCTCAAAGAAAGCTTTGGGAATGACAGTACCACTTTGGAGTCCTTGAGATTTGAATTAGCGAAAATTGAAGCTGCGACAAATAGATTTGCTAAAGAAAACATGATAGGCAAAGGCGGATTTGGAGAGGTCTATAGGGGTATTCTTTCTGATGGACAAGAAATAGCTGTGAAGAGGCTTACAGGAAGCTCTCGGCAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAGCTTCAACATAGAAATTTAGTGAGATTACTAGGATTTTGCTTAGAAGATGATGAAAAGATACTCATTTACGAGTACGTGAAAAACAAGAGTCTTGATTACTTTTTATCAGATATCAAGAAGCGAACACTTTTATCTTGGTCTGAACGACAGAAGATTATAAGAGGAATTGCACGAGGCATTTTATATCTACATGAAGATTCTTGCCTAAAAATAATACATCGTGATCTTAAACCTAGTAATGTTTTATTAGATAGTAATATGAATCCAAAGATTTCAGATTTTGGTATGGCTAGAATTGTTGCTGGAGATGAAATTGAAGAAAGTACAGGCAGAATCGTAGGAACTGGTTATATGCCCCCTGAGTATGCAATGCATGGACAATTTTCTGTGAAATCTGATGTATTTAGTTTTGGAGTTATGGTTCTAGAGATTATTAATGGAAAGAGAAAATGTTGTTCATCTGAAGCAGAGGTTATTGATGACATTCGAAGACATGCTTGGGCAAAATGGACAAAGGAAACACCACTAGAACTATTGGATCCTCATGTAGGAGGACCTTATTCTTGCGAAGAAGTCATCAAATATATCCACATTGGTTTGTTGTGTGTTCAGGAAGATCCAAATGACAGACCTACAATGGCAACAATTGTGTTTTACCTCAACAACCACTCAATCAATTTGCCTTCCCCTCATCAACCAGGATATTTTAAGAGTAATAGAAAAGACAACATGGCTACCAATAAGGAATTGGATAATATCACTGATTCCATCAATGAAATTTCTCTAACTAAATTCTTTCCTCGATAA 2151 0.4049 MSVEVLINSHHKNFLAATLKPSSASLSLQKLPSFVFASRVPSSPYEKDMASFNFFILHLTFFSLFLPCSPSPITQGALDGGSKAFYNCTRNSTFASYSVAYRSNVKTLLDWLSSNVTNNTRFYNTTVASRHTADTAYGSFLCTIVNNPEICQRCVKEAAKLISSLCTIAKEAIIWYELCYVRYSDRRFFSTVEESPKLSFMNDQDYVGDVGRFNNIVWDMLNDLRSEAASASSKSADKSVNITDNQKSYGYAWCLPYLTKENCSWCLSDAIADIPTGCCRGKSGGHIIFPSCGVRYELFPFHMAHVNSGWESPPPFPDSPPPFASPGKRKQKTLTIIVTVVPIVVSLVLLSLGCSCFLRRKETKNRHDILKESFGNDSTTLESLRFELAKIEAATNRFAKENMIGKGGFGEVYRGILSDGQEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVKNKSLDYFLSDIKKRTLLSWSERQKIIRGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAGDEIEESTGRIVGTGYMPPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKCCSSEAEVIDDIRRHAWAKWTKETPLELLDPHVGGPYSCEEVIKYIHIGLLCVQEDPNDRPTMATIVFYLNNHSINLPSPHQPGYFKSNRKDNMATNKELDNITDSINEISLTKFFPR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02686 716 ProSiteProfiles Gnk2-homologous domain profile. 194 301 IPR002902 -
Phco6g02686 716 Gene3D - 82 188 IPR038408 -
Phco6g02686 716 Gene3D - 197 301 IPR038408 -
Phco6g02686 716 Gene3D Phosphorylase Kinase; domain 1 359 473 - -
Phco6g02686 716 Pfam Salt stress response/antifungal 209 297 IPR002902 -
Phco6g02686 716 Pfam Salt stress response/antifungal 88 185 IPR002902 -
Phco6g02686 716 ProSiteProfiles Protein kinase domain profile. 398 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02686 716 ProSiteProfiles Gnk2-homologous domain profile. 82 188 IPR002902 -
Phco6g02686 716 SUPERFAMILY Protein kinase-like (PK-like) 381 692 IPR011009 -
Phco6g02686 716 Pfam Protein kinase domain 399 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02686 716 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 85 708 - -
Phco6g02686 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Phco6g02686 716 CDD STKc_IRAK 404 670 - -
Phco6g02686 716 SMART serkin_6 398 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02686 716 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Phco6g02686 716 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 359 473 - -
Phco6g02686 716 Gene3D Transferase(Phosphotransferase) domain 1 474 677 - -
Phco6g02686 716 FunFam cysteine-rich receptor-like protein kinase 10 474 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02686 Phco-Chr6 48469890 48475967 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco6g02686 Pkinase 1e-48 CL0016