Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02667 ATGTATCACAGCAACACCAACTCTTCCAATTCTCAACAACAACATCAACATCACTCCACACCGGAAATGCCACCACACAGGACAACCTTGGAGAATGATTTGGAAAAGAACAAAGATGATGAAGCTGCTGGTAATGAAATAGATCTTCCTACTTCCTGTGACCAAGATCCCGACAAACAGATGAGAAAGAAGCAGCGTTACCATCGTCACTCACATGAACAGATATTGGAGATGGAATGTTTCTTTAAGGAGTGTCCTCACCCAGATGACAGACAAAGGACAGAGCTGAGCCGAGAACTGAAATTGGATCCCTTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGTACCCAAGTGAAGTCTCAACATGAACGCCATGAGAACAATCTTTTAAAGGCTGAGAATGACAAGCTTCTTGCAGAGAACATAAGGTACAAGGAGGCACTATTTCATGCTTCTTGCCCTAGTTGTGGAGGCCTCAATGGAGAAATGTCCTTTGATGAGCAACAGCTGAGGGCCGAGAATATGCGAATAAGAGAAGAGATTGAAAAGATGTCAGCGAAGATACCGAGATTTGATGGAAAACCTGGGAGTTCCTATCATAACATGCCCTCTCAAAACCAGATGATGCCTCCTAGGTCCCATGATCAGGGAGTTGGAAATTATGGAGCACAGACACTTATGATAGGGGAAATGTTTGGTGACAATAATGAATTCCTTGGGACACTCCCAATTGCTAATGATTTTGAAAAAGACATCGTTATGGAGATTGGTAACGTAGCAATGAAGGAACTCACAAACTTGGCTATGGCTGAAAACACTTTGTGGCTCCCCGGAAGCTGTGGCTGTGAGATTCTGGACCAAGATGAATATCTGAGGTCTTTCCCTAAGGGAATAGGTCCAACACCCCTGGGCATAAAAATCGAAGCTTCAAGGCATTCCGCAGTGGTCATCATGGATTACAATAAACTCGTTGAGATGTTTATGGATGTGAATCAATGGGCAAACATGTTTTGCGGCATCATTTCAAGGGCAGCGTTACACCAAGTTCTGGAAATTGGCCAAACAGAAATCTTCGATGGAGCCTCTCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTGTTCGTGACGACTATTTCGTGAGGTTCTGTAAGAGGAGAAGTGTAGAATCATGGACTATTGTTGATTTTTCCGTGGATCAGCTGCGACCTAGTTCATTCACAAAAAGCCGAAGACGACCCTCTGGTTGCGTAATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATGTAGAACTTGAAGATAATGAGGTGCATGATCTTTACAAAAGCTATGTTAATTCTGGCCTTGCCTTTGGAGCTAAACGCTGGGTGTCATCATTGGATAGACAATGCGAACGTCTTGCTAGTGCAATGGCCACGAACATACCCCCCGCGAGCATTGGTGTGCTAACGAATTGCGGCGGCCGAAGAAGCATGATGAGGCTGGCTGAAAGAATGATGATGAGCTTTTGTACTGCTGTTGGTGCTTCCACTGCAAATACTTGGACACTACTAACAGTTGCCACTGAAGATGTAAGGGTCATGACCAGAAAAAGCGTGGATGATCCAGGCAGACCTTCTGGTATTGTGCTCAGTGCTGCAACTTCTTTGTGGCTCCCAGTTTCTTCAACCACCGTTTTTAGTTTTCTGCGATCTGAAAACTCAAGAAACCAGTGGGACATTCTCTCTAAGGGAGGACAAGTGGAAGAATTGGCACACATTGCCAATGGTCATGATACTGGGAACTGTGTCTCCTTGCTTCGAGTCAACACTCCGAATTCCAGCCAAAGCAATATGATTATACTTCAAGAGAGTTGCACTGATGCAACGGGGTCGTTTATTGTGTATGCTCCTGTTGATTTAATGTCCATGAATGCTGTGTTGAAAGGTGGAAATCCTGATTGTGTTGCACTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACCGATGAACAACGGAGGACCCATTGGTGTGGTTGGATCTGGAGGTTGCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGTTCCAACTTCAAAACTCTCTGCTAGTTCAGTGACTACTGTTAGCAGTTTAATCAAGTGCACGGTTGAGCGGATCCAAGCTGCAGTGTGCAGTGGCCGCACTTAG 2205 0.4508 MYHSNTNSSNSQQQHQHHSTPEMPPHRTTLENDLEKNKDDEAAGNEIDLPTSCDQDPDKQMRKKQRYHRHSHEQILEMECFFKECPHPDDRQRTELSRELKLDPLQVKFWFQNKRTQVKSQHERHENNLLKAENDKLLAENIRYKEALFHASCPSCGGLNGEMSFDEQQLRAENMRIREEIEKMSAKIPRFDGKPGSSYHNMPSQNQMMPPRSHDQGVGNYGAQTLMIGEMFGDNNEFLGTLPIANDFEKDIVMEIGNVAMKELTNLAMAENTLWLPGSCGCEILDQDEYLRSFPKGIGPTPLGIKIEASRHSAVVIMDYNKLVEMFMDVNQWANMFCGIISRAALHQVLEIGQTEIFDGASQVMSAEFQVPSPLVPVRDDYFVRFCKRRSVESWTIVDFSVDQLRPSSFTKSRRRPSGCVITELPNGYSKIVWIEHVELEDNEVHDLYKSYVNSGLAFGAKRWVSSLDRQCERLASAMATNIPPASIGVLTNCGGRRSMMRLAERMMMSFCTAVGASTANTWTLLTVATEDVRVMTRKSVDDPGRPSGIVLSAATSLWLPVSSTTVFSFLRSENSRNQWDILSKGGQVEELAHIANGHDTGNCVSLLRVNTPNSSQSNMIILQESCTDATGSFIVYAPVDLMSMNAVLKGGNPDCVALLPSGFAVLPDGPEPMNNGGPIGVVGSGGCLLTVAFQILVDSVPTSKLSASSVTTVSSLIKCTVERIQAAVCSGRT 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02667 734 CDD START_ArGLABRA2_like 250 473 - -
Phco6g02667 734 SUPERFAMILY Bet v1-like 248 476 - -
Phco6g02667 734 CDD homeodomain 64 122 IPR001356 GO:0003677
Phco6g02667 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 729 IPR042160 -
Phco6g02667 734 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Phco6g02667 734 SMART HOX_1 62 125 IPR001356 GO:0003677
Phco6g02667 734 Gene3D - 51 138 - -
Phco6g02667 734 MobiDBLite consensus disorder prediction 20 45 - -
Phco6g02667 734 Coils Coil 167 187 - -
Phco6g02667 734 Coils Coil 115 147 - -
Phco6g02667 734 MobiDBLite consensus disorder prediction 1 19 - -
Phco6g02667 734 MobiDBLite consensus disorder prediction 1 68 - -
Phco6g02667 734 ProSiteProfiles START domain profile. 246 477 IPR002913 GO:0008289
Phco6g02667 734 SUPERFAMILY Bet v1-like 497 726 - -
Phco6g02667 734 Pfam START domain 260 474 IPR002913 GO:0008289
Phco6g02667 734 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
Phco6g02667 734 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Phco6g02667 734 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Phco6g02667 734 SMART START_1 255 474 IPR002913 GO:0008289
Phco6g02667 734 FunFam Homeobox-leucine zipper protein HDG1 51 137 - -
Phco6g02667 734 Gene3D - 308 479 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02667 Phco-Chr6 48307454 48312120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco6g02667 START 1e-43 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02667 6 48307454 48312120 Phco6g02667 6 48307454 48312120 ECH
Phco6g02667 6 48307454 48312120 Phco4g00067 4 428292 431506 ECH
Phco4g00067 4 428292 431506 Phco6g02667 6 48307454 48312120 PCT