Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02658 ATGGAGAAGGAGAAGGAGAAGCAGAATGAGCGGCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAATCATGATGATGGAGGTAATTCTGGAGAGGATTTGATGACGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCAAACTGCGTGTCTGGTTTTAAACTGGAGAAAGCAAGGGAAACTCGGTATCGGAGTCAGATTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACCAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGCTGCAGATGAAGGTTCGTACTGATGTGAGTTCTGAATACTGGCTCAATACTAAGTGTGCATTTCCGGACAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAATATTCAGATGGTTTTGAGCCATTGGAAGATTCTGAAGCTGATTTACCAGAGTCAGATGCTTTAAAGAATGGAATTTCTAAGGATTCACCTGTTGATGAAGATATTGATATGATGGATTCTGATCATAATGGGGATTCCAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCGTCTATACTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATCGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGTCGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGAAAATTCAATGTTTTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAACCACGAGTCTGCTCTGGCAAGAACCTTGGACAATGGCTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACTGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCTTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCTTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGATAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGATTATGATATGTATAATCGAAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCGGATTCCCCATTCTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCGCAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGGGAAGACGTGTCAAAGTTTTCAGGAAAAGGAAAAAGAAGAGACCACCTCTCATCTGACAGCATTGCACCAGCCAGTGATAACACAGTAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTGTGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCAGAAACATGCATACGAAGATGTTGGAACTGGTTTGAACCACCACATGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTTGGCCAGGGTTCATTATCGGATGCCAGAGGGCATTCTTCAAACGGAAGAGCAAACTGGAACTGA 3237 0.422 MEKEKEKQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSGEDLMTDLEDALSKQRPNCVSGFKLEKARETRYRSQIQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNTKCAFPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGFEPLEDSEADLPESDALKNGISKDSPVDEDIDMMDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSKFSGKGKRRDHLSSDSIAPASDNTVVAEESLELRTESVPVANDRTSEDSFHVTPSKRFKSEGTNFQKHAYEDVGTGLNHHMLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02658 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 894 953 IPR029295 GO:0042393
Phco6g02658 1078 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Phco6g02658 1078 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
Phco6g02658 1078 SMART SnAC_2 893 953 IPR029295 GO:0042393
Phco6g02658 1078 Gene3D - 345 600 IPR038718 -
Phco6g02658 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Phco6g02658 1078 MobiDBLite consensus disorder prediction 963 978 - -
Phco6g02658 1078 MobiDBLite consensus disorder prediction 1058 1078 - -
Phco6g02658 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 601 IPR027417 -
Phco6g02658 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 116 968 - -
Phco6g02658 1078 FunFam Chromatin structure-remodeling complex protein SYD 367 610 - -
Phco6g02658 1078 Coils Coil 891 911 - -
Phco6g02658 1078 CDD SF2_C_SNF 678 811 - -
Phco6g02658 1078 SMART ultradead3 372 565 IPR014001 -
Phco6g02658 1078 MobiDBLite consensus disorder prediction 295 347 - -
Phco6g02658 1078 MobiDBLite consensus disorder prediction 963 983 - -
Phco6g02658 1078 Gene3D - 607 907 IPR027417 -
Phco6g02658 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 854 IPR027417 -
Phco6g02658 1078 SMART helicmild6 716 800 IPR001650 -
Phco6g02658 1078 Coils Coil 176 196 - -
Phco6g02658 1078 MobiDBLite consensus disorder prediction 323 345 - -
Phco6g02658 1078 FunFam Probable ATP-dependent DNA helicase CHR12 607 906 - -
Phco6g02658 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02658 Phco-Chr6 48200596 48211502 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g02658 SNF2_N 3.8e-68 CL0023