Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02652 ATGTCACCCGTTCAAATCTCCAATTGCATTTCTCACCCTCTCTTCTCTTTCTCGCACCAGACAGAGCAAACACTCTGTTCTCAGAACCTTCCTTTGCTTTTTCTCTCGTTCATGGAGCTCCAGAGGCGCCAGGATCAGAGTCTCTCCCAGCGGAAGGGGCAGAAGCGGAAGCTTGACGACGAACAGCACGACGAGGGGCAGATCTCGGCGGCGCCGCCCACCGCCGACGAGCGAGCGGCGCTCCTCTACGATGTTGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGTGGATCGATCCGCGGCCAAACGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGGCGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGGTTGACCGTGTCGAGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAGGGGAGCGCTTTCGCATTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCCTTGATACATCTTGTTGATCTTTTAAAGAGGCACAAGGATGGCTTAACATCCCGTGCTATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCCCTTGTTCATTTGCTTGATTTTGCCGATGCAAAGGTTCAAAGAGCAGCTGCTGGTGCTCTACGAACTCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTGCACTCTTCACCTAATATAAAGAAAGAAGTTCTTGTTGCTGGAGCTTTACAGCCAGTTATTGGATTACTCAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCTGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCAACCTTTGATAGAAATGCTTCAGTCATCTGATGTACAACTCAGGGAAATGTCCGCTTTCGCTTTGGGAAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGACAATGAGGATAATGTGTCCGATTTCGTTAGGGTAGGTGGAGTTCAGAGGCTGCAAGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCAGGGCCGTGTGCTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGGCGAGTTGCTTTGGCTCTTGCGCATCTTTGTTCTGCAGATGATCAGAGAAAAGTTTTTATTGATCACTACGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCGTCTACCTTGTCTCCTATTGATGCTCCTCCTCTTTCTCCAACACCACAGGTATATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACAATTTTATGCACACAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGCTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGATGTCACACTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGAAGGACTTAAGAGGCTCTGTGAGTACACAATTGCACAGGATATATCACTAGAAAATGTTTCAAGTATGTACGAACTTTCAGAAGCCTTCAATGCAATACCGCTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCATTCTCTTCTGATTCAGCGTGTAATACCAGAGATCCGCAATTACTTTGTTAAAGCACTTACAAAGGCCAACTCCCATAACAACCGACTGTAG 2232 0.4574 MSPVQISNCISHPLFSFSHQTEQTLCSQNLPLLFLSFMELQRRQDQSLSQRKGQKRKLDDEQHDEGQISAAPPTADERAALLYDVAEQVSILESTFTWNEVDRSAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLVDRVEKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKDGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLVAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFVRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKVFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPIDAPPLSPTPQVYLGEQYVNNATLSDVTFLVEGKQFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAIPLRHACILFILEQFDKLSARPGHSLLIQRVIPEIRNYFVKALTKANSHNNRL 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02652 743 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 38 738 IPR044282 -
Phco6g02652 743 Gene3D - 85 204 IPR011989 -
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 317 IPR000225 GO:0005515
Phco6g02652 743 MobiDBLite consensus disorder prediction 46 73 - -
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 233 IPR000225 GO:0005515
Phco6g02652 743 Gene3D - 306 452 IPR011989 -
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Phco6g02652 743 SMART BTB_4 576 673 IPR000210 GO:0005515
Phco6g02652 743 SUPERFAMILY ARM repeat 207 545 IPR016024 -
Phco6g02652 743 CDD BTB_POZ_ARIA_plant 563 678 - -
Phco6g02652 743 SUPERFAMILY POZ domain 568 670 IPR011333 -
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 268 IPR000225 GO:0005515
Phco6g02652 743 ProSiteProfiles BTB domain profile. 576 643 IPR000210 GO:0005515
Phco6g02652 743 Pfam Armadillo/beta-catenin-like repeat 348 387 IPR000225 GO:0005515
Phco6g02652 743 Pfam Armadillo/beta-catenin-like repeat 229 261 IPR000225 GO:0005515
Phco6g02652 743 Pfam Armadillo/beta-catenin-like repeat 264 303 IPR000225 GO:0005515
Phco6g02652 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 130 184 IPR000225 GO:0005515
Phco6g02652 743 Pfam BTB/POZ domain 569 671 IPR000210 GO:0005515
Phco6g02652 743 Gene3D - 205 305 IPR011989 -
Phco6g02652 743 Gene3D - 453 558 IPR011989 -
Phco6g02652 743 SMART arm_5 348 388 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 119 171 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 222 262 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 504 544 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 389 429 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 172 220 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 306 346 IPR000225 GO:0005515
Phco6g02652 743 SMART arm_5 264 304 IPR000225 GO:0005515
Phco6g02652 743 SUPERFAMILY ARM repeat 102 195 IPR016024 -
Phco6g02652 743 Gene3D Potassium Channel Kv1.1; Chain A 565 702 IPR011333 -
Phco6g02652 743 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02652 Phco-Chr6 48177668 48186571 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco6g02652 BTB 1e-24 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02652 6 48177668 48186571 Phco6g02652 6 48177668 48186571 ECH
Phco4g00079 4 514236 523889 Phco6g02652 6 48177668 48186571 PCT