Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02593 ATGTTCTCTTCCACATATGACTCCAACCTTTTTCCAAACTTCCCTTCATCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAACCAACACCCTTTTTGATGACCCTCTTCTCGTTCCCTTCACACCCATCACACATGATCCTCCATTCCCTGAAGAAACTGTTGCCAATTTTGCAGTTGCTGACTGCACTGCCATGCTTGAACAGGATGCAAACACTAACTATGGTTCCAACTATGGTAGCATGTCCAATTTTCTGACCCAGAAACCAGCCATAGCAAAGAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGCAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCCTTGAGTGGCTTTTCACAAAGTCTGAGAATGCGATCAAAGAACTAGCCCAAAGTAAGCATAGCGGTATTAGTGGGGGTGACAAGTGTTCTCTCGACGCTTCTGTGGATTCAAATAACAACAAATCATTGGCGGGTAGTGGGGTTGATGGTTCCAAAGGGAGGAAGTCAAAATGGGCACAGAAGGATGATGCTTGTGTTCAGACCAAAAAGGAGTCAAGGGAGAGGGCAAGAGCAAGAGCGAGAGAAAGAACTTGTTACAAAATGTGCAGCAATAGAAGGGTGCAGCAAGACTTTGATGAAAGGTGCCCTGCAACTGCAAACACTCAAATGCTGCACCAATTGAGGTCATCCATTCTGCCAGAACCTGAAGCCTGCGGGAGATGGGTTCAGCCTTATAACCCTTTTCTCATTCATAACGAAGCACCAAGAGATGGATTTGACGTCATTGAGGAATCTATTATGATTAAAAGGAACATGAAGCCGTCATCTATGATGGCTTCTCATCACCAAAATCAAAACCAAAGTCAAAACCTTGTGATCCCTAGGGATGCCGGTTTCTACAACAATGTGTGCCCCTTGCTACCCTATTCCACTCCAGAGTGGGACACTAATGGGGCCGTTAGTGGACGCTCCAACTTTTGTGCAATAGGCACCATGAACCTATCTACATGTTTCATGAACCCGTGCCAATGGCAAGTGAAGGTTCGCATACAGCTATTGAAAAGTTTACACCCTTACACATCTGAATGCAAAACTATGGTTTCTCGTATTCAAAGGGATGGATCTTTTGATCTCTTTTCAAAGATCATAGACAAATGGCTACAATCCTTCGGGCTACCAAAGATGTTTTCATACGGCCTTCCATATGTTGCTTTAACTGTGAGAGCTTACAGGGATAACAAACCTAGCTGTTTAGCGGTTCATTATGTAGCAAGTTATTGA 1368 0.4386 MFSSTYDSNLFPNFPSSSYPILPFLIDPENDFATNTLFDDPLLVPFTPITHDPPFPEETVANFAVADCTAMLEQDANTNYGSNYGSMSNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGISGGDKCSLDASVDSNNNKSLAGSGVDGSKGRKSKWAQKDDACVQTKKESRERARARARERTCYKMCSNRRVQQDFDERCPATANTQMLHQLRSSILPEPEACGRWVQPYNPFLIHNEAPRDGFDVIEESIMIKRNMKPSSMMASHHQNQNQSQNLVIPRDAGFYNNVCPLLPYSTPEWDTNGAVSGRSNFCAIGTMNLSTCFMNPCQWQVKVRIQLLKSLHPYTSECKTMVSRIQRDGSFDLFSKIIDKWLQSFGLPKMFSYGLPYVALTVRAYRDNKPSCLAVHYVASY 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02593 455 ProSiteProfiles R domain profile. 212 229 IPR017888 -
Phco6g02593 455 MobiDBLite consensus disorder prediction 196 213 - -
Phco6g02593 455 Pfam TCP family transcription factor 98 232 IPR017887 -
Phco6g02593 455 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Phco6g02593 455 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 95 303 IPR005333 GO:0003700
Phco6g02593 455 MobiDBLite consensus disorder prediction 184 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02593 Phco-Chr6 47593035 47595960 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco6g02593 TCP 2.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02593 6 47593035 47595960 Phco5g00577 5 5453807 5454999 PCT